Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0667 ATGGCGATTCCGATTCCCAGTCGGCAGCTATTCATCGGTGGCGAGTGGAGGGAACCGGTGCTCAAGAAACGCATCCCCATCGTCAACCCTGCTACTGAAGAAATAATCGGATCTATTCCCGCAGCTACTGCGGAAGATGTAGAGTTAGCTGTAGATGCTGCTAGAAAAGCCCTTGCGAGGAATAAAGGCAAAGATTGGGCCTCTGCTTCGGGGGCTCTTCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCGAAGCTTGAAACAATAGATTGTGGAAAACCTCTGGAAGAAGCTGCATGGGACATCGATGATGTTGCTGGGTGCTTTGAATACTATGCGGATCTTGCTGAAGGGTTGGATGCAAAGCAAAAAGCTCCTGTTTCCGTTCCCATGGATACGTTCAAGAGCTATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCTTGGAACTATCCTCTATTGATGGCTGTATGGAAAGTAGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCGTCAGAATTGGCATCTGTCACCTGTTTGGAACTAGCGGAAATTTGTAAAGATGTTGGTCTTCCACCTGGCATTTTGAATATTCTGACAGGATTGGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCATGTTGACAAGATTGCATTTACTGGGAGTGGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCAGTCACCATGGAACTTGGTGGAAAAAGTCCGATTGTTATTTTTGAGGATGTCGACCTTGATAAGGCTGCCGAATGGACGATCTTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCTCGTCTAATTGTACACGAAAACATTGCTGATAAATTCTTGGATAAGCTCGTGCAATGGTGCAAGAACATTAAGATTTCAGATCCTTTGGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAGTATTGAAGTTTGTCTCAACTGCTGAGAGCGAAGGTGCAAAGATTCTATTTGGTGGAGTTCGTCCTAAGCACCTAAACAAGGGATACTTCGTCGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAGAGAAGAAGTCTTTGGACCTGTTCTATGTGCGAAGACTTTTAGTTCTGAAGATGAAGCAATTGAATTAGCAAATGATACGATATATGGGCTAGGTGCTGCTGTGATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAACTAGGGGAATGGGGACTTGAAAATTATCTGACTGTAAAGCAGGTTACTCAATATGTATCCGATGAACCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA 1512 45.11 MAIPIPSRQLFIGGEWREPVLKKRIPIVNPATEEIIGSIPAATAEDVELAVDAARKALARNKGKDWASASGALRAKYLRAIAAKITERKSELAKLETIDCGKPLEEAAWDIDDVAGCFEYYADLAEGLDAKQKAPVSVPMDTFKSYVLKEPIGVVGLITPWNYPLLMAVWKVAPALAAGCAAILKPSELASVTCLELAEICKDVGLPPGILNILTGLGPEAGAPLASHPHVDKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVIFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIVHENIADKFLDKLVQWCKNIKISDPLEEGCRLGPVVSAGQYEKVLKFVSTAESEGAKILFGGVRPKHLNKGYFVEPAIITNVTTSMQIWREEVFGPVLCAKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLENYLTVKQVTQYVSDEPWGWYKSPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5186874 5191705 - Lag0034195.1 Lac3g0667 601089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0667 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
Lac3g0667 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Lac3g0667 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
Lac3g0667 503 SUPERFAMILY ALDH-like 5 488 IPR016161 GO:0016491(InterPro)
Lac3g0667 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 502 - -
Lac3g0667 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
Lac3g0667 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
Lac3g0667 503 CDD ALDH_F10_BADH 27 487 - -
Lac3g0667 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Lac3g0667 503 Pfam Aldehyde dehydrogenase family 17 485 IPR015590 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0667 Lac-Chr3:5186874 Lac3g0889 Lac-Chr3:7183118 4.70E-99 dispersed
Lac3g0667 Lac-Chr3:5186874 Lac11g0932 Lac-Chr11:10144511 3.30E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0667 K00130 - csv:101213657 947.577