Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0670 ATGGGCGGCAATGGCAAGTTCCGGTGGAAATCCCTCTTCCACCACCGTCGCTCTCTTTCTAATTCTAGGGTCGAATCCAAGGAGCCTCCCAAGGAGTTCATTTGTCCAGTTTCTGGTTCGTTAATGGCGGACCCGGTTGTCGTCTCTTCTGGACAGACGTTCGAGGGTGTTTCAGCGCAGGTTTGCAGGAATTTGGGGTTCTCCCCTGTGTTAGAGGATGGCTCCAAGCCAGATTTCTCCACTGTGATTCCGAATTTAGCTATGAAGACGACGATTCTCCATTGGTGTGAGAAGTCCGGTGCTCGGAATCCTCAGCCGCCTGATTACAGCTCCGTGGAGAGGATTGTTGGTGCATTGATGGAGAAGGAGAAGCCTCAGGCCGGAATTAGGGACTCGTCGGATAGGGATTTGTTGGCAGGGGTATCGGATTTGCCGCCGGTGAATTTTTCGCACGCCGCGACGGAGTTAGGCCACCGTCCGGAACGTTTCTACACGAGCTCGTCGGAGGAATCGGTTATCGTCGGAGGAAGTCCGGGAACTCCTCTGCCGTTCACGACTCGACCTGCGTGTTATTCCTCTTCGTCTTCTTCCTGTGAAATTGTGGAAAACGATGCGCTCATCCAAACCCTAGGCCCTAATTCATCTATATCCCAAGAAGAGAAGGAATTATTATCGAAGCTCATGAGTCCCGATGTGTTTAAGCAAGAAGAAGGCGTTATTTCGCTGAGAAATATCACGAGAGCCGATGAGAAAATTAGGGTTTCGCTTTGTACGCCTCGGATTCTTTCATCTCTCCGCCCTTTGATAACATCGAGATACTCCACTGTACAGATCAACGCCGTCGCCTCTCTGGTAAATCTCTCCCTCGAAAAGCCAAACAAACTAAAGATCGCACGGTCGGGATTAGTTCCGAACTTAATCGACGCGCTGAAAGGAGGACATGGCGAAGCGCAAGAACACGCCGCCGGAGCGCTCTTCAGCCTGGCCTTAGAGGACGAAAATCGGATGACAATCGGAGTTCTCGGCGCACTGCCTCCACTCCTCTACGCACTCCGATCGGAAAGCGATAGAACACGAGACGATTCCGCTCTGTGTCTGTACAACCTAACAATGATTCAGAGCAACCGAGTGAAGCTCGTGAAACTCGGCGCCGTAACGACTTTACTTTCCATGATGAAATCAAGTAACTCGACGAATCGGCTGCTGCTGATTCTCTGCAACATCGCCGTGTGCCAGGAGGGAAGATCGGCAATGCTGGACGCCGACGCCGTCGGGCTCTTGGTCGGAATGCTGAGGCAGAAAGAGCTAGACTCCGATTCGACTCGCGAGAATTGCGTTGCGGCATTGTACGCACTCAGCTACGGAAGCATGAGGTTCAAAGGACTGGCGAAGGAAGCCGGAGCAATGGAGGTTCTGAGAGAAATTGCTGAAAGAGGAAGTGAGAGAGCGAGAGAGAAGGCGAAGAAGATATTGGAGAGAATGAGAACGAGAGGGAGATTCGATGAAGACGATGAAGAAGACGATAATGGCGGCGAGTCGAGTTTTGAGAGAGTTGGACTCAGCTCAACTCGGTACCGAATCGGAGGTGGAAGAAATCCCAGCTCGGCCAATACGACGCCGTTTTGA 1626 51.97 MGGNGKFRWKSLFHHRRSLSNSRVESKEPPKEFICPVSGSLMADPVVVSSGQTFEGVSAQVCRNLGFSPVLEDGSKPDFSTVIPNLAMKTTILHWCEKSGARNPQPPDYSSVERIVGALMEKEKPQAGIRDSSDRDLLAGVSDLPPVNFSHAATELGHRPERFYTSSSEESVIVGGSPGTPLPFTTRPACYSSSSSSCEIVENDALIQTLGPNSSISQEEKELLSKLMSPDVFKQEEGVISLRNITRADEKIRVSLCTPRILSSLRPLITSRYSTVQINAVASLVNLSLEKPNKLKIARSGLVPNLIDALKGGHGEAQEHAAGALFSLALEDENRMTIGVLGALPPLLYALRSESDRTRDDSALCLYNLTMIQSNRVKLVKLGAVTTLLSMMKSSNSTNRLLLILCNIAVCQEGRSAMLDADAVGLLVGMLRQKELDSDSTRENCVAALYALSYGSMRFKGLAKEAGAMEVLREIAERGSERAREKAKKILERMRTRGRFDEDDEEDDNGGESSFERVGLSSTRYRIGGGRNPSSANTTPF 541
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 5215747 5217372 - Lag0034198.1 Lac3g0670 601092
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0670 541 SUPERFAMILY RING/U-box 16 104 - -
Lac3g0670 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 101 IPR013083 -
Lac3g0670 541 PANTHER U BOX DOMAIN-CONTAINING 23 496 - -
Lac3g0670 541 MobiDBLite consensus disorder prediction 483 502 - -
Lac3g0670 541 FunFam RING-type E3 ubiquitin transferase 11 103 - -
Lac3g0670 541 Gene3D - 218 400 IPR011989 -
Lac3g0670 541 Pfam U-box domain 30 98 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac3g0670 541 MobiDBLite consensus disorder prediction 527 541 - -
Lac3g0670 541 MobiDBLite consensus disorder prediction 483 541 - -
Lac3g0670 541 SUPERFAMILY ARM repeat 222 492 IPR016024 -
Lac3g0670 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 301 338 IPR000225 GO:0005515(InterPro)
Lac3g0670 541 SMART Ubox_2 32 95 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac3g0670 541 Gene3D - 401 506 IPR011989 -
Lac3g0670 541 Pfam Armadillo/beta-catenin-like repeat 332 370 IPR000225 GO:0005515(InterPro)
Lac3g0670 541 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac3g0670 541 FunFam RING-type E3 ubiquitin transferase 218 494 - -
Lac3g0670 541 SMART arm_5 249 289 IPR000225 GO:0005515(InterPro)
Lac3g0670 541 SMART arm_5 290 330 IPR000225 GO:0005515(InterPro)
Lac3g0670 541 SMART arm_5 411 454 IPR000225 GO:0005515(InterPro)
Lac3g0670 541 SMART arm_5 331 371 IPR000225 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0670 Lac-Chr3:5215747 Lac3g2470 Lac-Chr3:36225284 2.20E-22 dispersed
Lac10g0421 Lac-Chr10:3312646 Lac3g0670 Lac-Chr3:5215747 5.60E-105 wgd
Lac3g0670 Lac-Chr3:5215747 Lac8g2617 Lac-Chr8:43757941 4.90E-110 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0670 - - - 0.0