Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0670 ATGGGCGGCAATGGCAAGTTCCGGTGGAAATCCCTCTTCCACCACCGTCGCTCTCTTTCTAATTCTAGGGTCGAATCCAAGGAGCCTCCCAAGGAGTTCATTTGTCCAGTTTCTGGTTCGTTAATGGCGGACCCGGTTGTCGTCTCTTCTGGACAGACGTTCGAGGGTGTTTCAGCGCAGGTTTGCAGGAATTTGGGGTTCTCCCCTGTGTTAGAGGATGGCTCCAAGCCAGATTTCTCCACTGTGATTCCGAATTTAGCTATGAAGACGACGATTCTCCATTGGTGTGAGAAGTCCGGTGCTCGGAATCCTCAGCCGCCTGATTACAGCTCCGTGGAGAGGATTGTTGGTGCATTGATGGAGAAGGAGAAGCCTCAGGCCGGAATTAGGGACTCGTCGGATAGGGATTTGTTGGCAGGGGTATCGGATTTGCCGCCGGTGAATTTTTCGCACGCCGCGACGGAGTTAGGCCACCGTCCGGAACGTTTCTACACGAGCTCGTCGGAGGAATCGGTTATCGTCGGAGGAAGTCCGGGAACTCCTCTGCCGTTCACGACTCGACCTGCGTGTTATTCCTCTTCGTCTTCTTCCTGTGAAATTGTGGAAAACGATGCGCTCATCCAAACCCTAGGCCCTAATTCATCTATATCCCAAGAAGAGAAGGAATTATTATCGAAGCTCATGAGTCCCGATGTGTTTAAGCAAGAAGAAGGCGTTATTTCGCTGAGAAATATCACGAGAGCCGATGAGAAAATTAGGGTTTCGCTTTGTACGCCTCGGATTCTTTCATCTCTCCGCCCTTTGATAACATCGAGATACTCCACTGTACAGATCAACGCCGTCGCCTCTCTGGTAAATCTCTCCCTCGAAAAGCCAAACAAACTAAAGATCGCACGGTCGGGATTAGTTCCGAACTTAATCGACGCGCTGAAAGGAGGACATGGCGAAGCGCAAGAACACGCCGCCGGAGCGCTCTTCAGCCTGGCCTTAGAGGACGAAAATCGGATGACAATCGGAGTTCTCGGCGCACTGCCTCCACTCCTCTACGCACTCCGATCGGAAAGCGATAGAACACGAGACGATTCCGCTCTGTGTCTGTACAACCTAACAATGATTCAGAGCAACCGAGTGAAGCTCGTGAAACTCGGCGCCGTAACGACTTTACTTTCCATGATGAAATCAAGTAACTCGACGAATCGGCTGCTGCTGATTCTCTGCAACATCGCCGTGTGCCAGGAGGGAAGATCGGCAATGCTGGACGCCGACGCCGTCGGGCTCTTGGTCGGAATGCTGAGGCAGAAAGAGCTAGACTCCGATTCGACTCGCGAGAATTGCGTTGCGGCATTGTACGCACTCAGCTACGGAAGCATGAGGTTCAAAGGACTGGCGAAGGAAGCCGGAGCAATGGAGGTTCTGAGAGAAATTGCTGAAAGAGGAAGTGAGAGAGCGAGAGAGAAGGCGAAGAAGATATTGGAGAGAATGAGAACGAGAGGGAGATTCGATGAAGACGATGAAGAAGACGATAATGGCGGCGAGTCGAGTTTTGAGAGAGTTGGACTCAGCTCAACTCGGTACCGAATCGGAGGTGGAAGAAATCCCAGCTCGGCCAATACGACGCCGTTTTGA 1626 51.97 MGGNGKFRWKSLFHHRRSLSNSRVESKEPPKEFICPVSGSLMADPVVVSSGQTFEGVSAQVCRNLGFSPVLEDGSKPDFSTVIPNLAMKTTILHWCEKSGARNPQPPDYSSVERIVGALMEKEKPQAGIRDSSDRDLLAGVSDLPPVNFSHAATELGHRPERFYTSSSEESVIVGGSPGTPLPFTTRPACYSSSSSSCEIVENDALIQTLGPNSSISQEEKELLSKLMSPDVFKQEEGVISLRNITRADEKIRVSLCTPRILSSLRPLITSRYSTVQINAVASLVNLSLEKPNKLKIARSGLVPNLIDALKGGHGEAQEHAAGALFSLALEDENRMTIGVLGALPPLLYALRSESDRTRDDSALCLYNLTMIQSNRVKLVKLGAVTTLLSMMKSSNSTNRLLLILCNIAVCQEGRSAMLDADAVGLLVGMLRQKELDSDSTRENCVAALYALSYGSMRFKGLAKEAGAMEVLREIAERGSERAREKAKKILERMRTRGRFDEDDEEDDNGGESSFERVGLSSTRYRIGGGRNPSSANTTPF 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5215747 5217372 - Lag0034198.1 Lac3g0670 601092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0670 541 SUPERFAMILY RING/U-box 16 104 - -
Lac3g0670 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 101 IPR013083 -
Lac3g0670 541 PANTHER U BOX DOMAIN-CONTAINING 23 496 - -
Lac3g0670 541 MobiDBLite consensus disorder prediction 483 502 - -
Lac3g0670 541 FunFam RING-type E3 ubiquitin transferase 11 103 - -
Lac3g0670 541 Gene3D - 218 400 IPR011989 -
Lac3g0670 541 Pfam U-box domain 30 98 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac3g0670 541 MobiDBLite consensus disorder prediction 527 541 - -
Lac3g0670 541 MobiDBLite consensus disorder prediction 483 541 - -
Lac3g0670 541 SUPERFAMILY ARM repeat 222 492 IPR016024 -
Lac3g0670 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 301 338 IPR000225 GO:0005515(InterPro)
Lac3g0670 541 SMART Ubox_2 32 95 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac3g0670 541 Gene3D - 401 506 IPR011989 -
Lac3g0670 541 Pfam Armadillo/beta-catenin-like repeat 332 370 IPR000225 GO:0005515(InterPro)
Lac3g0670 541 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac3g0670 541 FunFam RING-type E3 ubiquitin transferase 218 494 - -
Lac3g0670 541 SMART arm_5 249 289 IPR000225 GO:0005515(InterPro)
Lac3g0670 541 SMART arm_5 290 330 IPR000225 GO:0005515(InterPro)
Lac3g0670 541 SMART arm_5 411 454 IPR000225 GO:0005515(InterPro)
Lac3g0670 541 SMART arm_5 331 371 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0670 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0670 Lac-Chr3:5215747 Lac3g2470 Lac-Chr3:36225284 2.20E-22 dispersed
Lac10g0421 Lac-Chr10:3312646 Lac3g0670 Lac-Chr3:5215747 5.60E-105 wgd
Lac3g0670 Lac-Chr3:5215747 Lac8g2617 Lac-Chr8:43757941 4.90E-110 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001407 2 2 3 4 1 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 1 2 2 3 2 1 73