Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0670 | ATGGGCGGCAATGGCAAGTTCCGGTGGAAATCCCTCTTCCACCACCGTCGCTCTCTTTCTAATTCTAGGGTCGAATCCAAGGAGCCTCCCAAGGAGTTCATTTGTCCAGTTTCTGGTTCGTTAATGGCGGACCCGGTTGTCGTCTCTTCTGGACAGACGTTCGAGGGTGTTTCAGCGCAGGTTTGCAGGAATTTGGGGTTCTCCCCTGTGTTAGAGGATGGCTCCAAGCCAGATTTCTCCACTGTGATTCCGAATTTAGCTATGAAGACGACGATTCTCCATTGGTGTGAGAAGTCCGGTGCTCGGAATCCTCAGCCGCCTGATTACAGCTCCGTGGAGAGGATTGTTGGTGCATTGATGGAGAAGGAGAAGCCTCAGGCCGGAATTAGGGACTCGTCGGATAGGGATTTGTTGGCAGGGGTATCGGATTTGCCGCCGGTGAATTTTTCGCACGCCGCGACGGAGTTAGGCCACCGTCCGGAACGTTTCTACACGAGCTCGTCGGAGGAATCGGTTATCGTCGGAGGAAGTCCGGGAACTCCTCTGCCGTTCACGACTCGACCTGCGTGTTATTCCTCTTCGTCTTCTTCCTGTGAAATTGTGGAAAACGATGCGCTCATCCAAACCCTAGGCCCTAATTCATCTATATCCCAAGAAGAGAAGGAATTATTATCGAAGCTCATGAGTCCCGATGTGTTTAAGCAAGAAGAAGGCGTTATTTCGCTGAGAAATATCACGAGAGCCGATGAGAAAATTAGGGTTTCGCTTTGTACGCCTCGGATTCTTTCATCTCTCCGCCCTTTGATAACATCGAGATACTCCACTGTACAGATCAACGCCGTCGCCTCTCTGGTAAATCTCTCCCTCGAAAAGCCAAACAAACTAAAGATCGCACGGTCGGGATTAGTTCCGAACTTAATCGACGCGCTGAAAGGAGGACATGGCGAAGCGCAAGAACACGCCGCCGGAGCGCTCTTCAGCCTGGCCTTAGAGGACGAAAATCGGATGACAATCGGAGTTCTCGGCGCACTGCCTCCACTCCTCTACGCACTCCGATCGGAAAGCGATAGAACACGAGACGATTCCGCTCTGTGTCTGTACAACCTAACAATGATTCAGAGCAACCGAGTGAAGCTCGTGAAACTCGGCGCCGTAACGACTTTACTTTCCATGATGAAATCAAGTAACTCGACGAATCGGCTGCTGCTGATTCTCTGCAACATCGCCGTGTGCCAGGAGGGAAGATCGGCAATGCTGGACGCCGACGCCGTCGGGCTCTTGGTCGGAATGCTGAGGCAGAAAGAGCTAGACTCCGATTCGACTCGCGAGAATTGCGTTGCGGCATTGTACGCACTCAGCTACGGAAGCATGAGGTTCAAAGGACTGGCGAAGGAAGCCGGAGCAATGGAGGTTCTGAGAGAAATTGCTGAAAGAGGAAGTGAGAGAGCGAGAGAGAAGGCGAAGAAGATATTGGAGAGAATGAGAACGAGAGGGAGATTCGATGAAGACGATGAAGAAGACGATAATGGCGGCGAGTCGAGTTTTGAGAGAGTTGGACTCAGCTCAACTCGGTACCGAATCGGAGGTGGAAGAAATCCCAGCTCGGCCAATACGACGCCGTTTTGA | 1626 | 51.97 | MGGNGKFRWKSLFHHRRSLSNSRVESKEPPKEFICPVSGSLMADPVVVSSGQTFEGVSAQVCRNLGFSPVLEDGSKPDFSTVIPNLAMKTTILHWCEKSGARNPQPPDYSSVERIVGALMEKEKPQAGIRDSSDRDLLAGVSDLPPVNFSHAATELGHRPERFYTSSSEESVIVGGSPGTPLPFTTRPACYSSSSSSCEIVENDALIQTLGPNSSISQEEKELLSKLMSPDVFKQEEGVISLRNITRADEKIRVSLCTPRILSSLRPLITSRYSTVQINAVASLVNLSLEKPNKLKIARSGLVPNLIDALKGGHGEAQEHAAGALFSLALEDENRMTIGVLGALPPLLYALRSESDRTRDDSALCLYNLTMIQSNRVKLVKLGAVTTLLSMMKSSNSTNRLLLILCNIAVCQEGRSAMLDADAVGLLVGMLRQKELDSDSTRENCVAALYALSYGSMRFKGLAKEAGAMEVLREIAERGSERAREKAKKILERMRTRGRFDEDDEEDDNGGESSFERVGLSSTRYRIGGGRNPSSANTTPF | 541 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5215747 | 5217372 | - | Lag0034198.1 | Lac3g0670 | 601092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0670 | 541 | SUPERFAMILY | RING/U-box | 16 | 104 | - | - | |
Lac3g0670 | 541 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 101 | IPR013083 | - | |
Lac3g0670 | 541 | PANTHER | U BOX DOMAIN-CONTAINING | 23 | 496 | - | - | |
Lac3g0670 | 541 | MobiDBLite | consensus disorder prediction | 483 | 502 | - | - | |
Lac3g0670 | 541 | FunFam | RING-type E3 ubiquitin transferase | 11 | 103 | - | - | |
Lac3g0670 | 541 | Gene3D | - | 218 | 400 | IPR011989 | - | |
Lac3g0670 | 541 | Pfam | U-box domain | 30 | 98 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac3g0670 | 541 | MobiDBLite | consensus disorder prediction | 527 | 541 | - | - | |
Lac3g0670 | 541 | MobiDBLite | consensus disorder prediction | 483 | 541 | - | - | |
Lac3g0670 | 541 | SUPERFAMILY | ARM repeat | 222 | 492 | IPR016024 | - | |
Lac3g0670 | 541 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 301 | 338 | IPR000225 | GO:0005515(InterPro) | |
Lac3g0670 | 541 | SMART | Ubox_2 | 32 | 95 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac3g0670 | 541 | Gene3D | - | 401 | 506 | IPR011989 | - | |
Lac3g0670 | 541 | Pfam | Armadillo/beta-catenin-like repeat | 332 | 370 | IPR000225 | GO:0005515(InterPro) | |
Lac3g0670 | 541 | ProSiteProfiles | U-box domain profile. | 28 | 102 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac3g0670 | 541 | FunFam | RING-type E3 ubiquitin transferase | 218 | 494 | - | - | |
Lac3g0670 | 541 | SMART | arm_5 | 249 | 289 | IPR000225 | GO:0005515(InterPro) | |
Lac3g0670 | 541 | SMART | arm_5 | 290 | 330 | IPR000225 | GO:0005515(InterPro) | |
Lac3g0670 | 541 | SMART | arm_5 | 411 | 454 | IPR000225 | GO:0005515(InterPro) | |
Lac3g0670 | 541 | SMART | arm_5 | 331 | 371 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0670 | Lac-Chr3:5215747 | Lac3g2470 | Lac-Chr3:36225284 | 2.20E-22 | dispersed | |
Lac10g0421 | Lac-Chr10:3312646 | Lac3g0670 | Lac-Chr3:5215747 | 5.60E-105 | wgd | |
Lac3g0670 | Lac-Chr3:5215747 | Lac8g2617 | Lac-Chr8:43757941 | 4.90E-110 | wgd |
Pathway information
