Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0696 ATGGCTGCTCGTAGAGGAATCTCTTCTTTGCTCTCTCGGTCTCTCTTTTCATCATCATCATCATCTTCTTCTTCTTCTGGTCATGGGTTTTGTTCTCTTCTTCAATCTTATGGAAGAGTTTCAAGGTTCCATGGAAGAGGGAACAGATTCAGCACATCTGCTTTGGCAGAGGAGGAACTTGTCACTCCTCCTGTTAAGATAAGTTACACTCAGAATCTGATTAATGGCCAGTTTGTTGATGCTGTGTCAGGGAAAACGTTTCCGACCTACGATCCTCGCACCGGGGAAGTGATTGCTCATGTTGCCGAGGGCGAGGCTGAGGATGTCAACCGAGCGGTATCGGCAGCTCGGAAGGCTTTCGACGAGGGGCCGTGGCCGAAAATGACTGCTTATGAACGATCGAGGATATTACTGCGGTTTGCAGATTTGGTTGAGAAACATAGCACTGAACTTGCAGCATTGGAGACATGGAACAATGGGAAACCTTACGAACAATCGCTTAAATCCGAAGTACCAGTAATCGTGCGCTTGTTTCACTATTACGCCGGCTGGGCAGACAAAATCCATGGCTTAACAGTTCCAGCTGATGGGAACCATCATGTGCAAGTACTACATGAACCAATTGGAGTTGCTGGACAGATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGTCCTGCTCTAGCCTGTGGCAACACCATTGTCCTAAAAACCGCAGAGCAAACACCTCTCACTGCTCTTTACGTCGCAAAGTTATTCCACGAGGCTGGTCTGCCTCCAGGCGTTTTGAATGTCGTTTCGGGCTATGGTCCAACGGCGGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCCTTCACAGGATCAACAAGCACAGGAAAAGTTGTGCTTGAATTGGCAGCTAAAAGCAATTTGAAGCCAGTAACACTAGAGCTTGGAGGAAAATCGCCTTTCATTGTTTGTGAGGATGCCGATGTCAATAAGGCCGTGGAACTTGCTCATTTTGCGCTTTTTTTCAATCAGGGGCAATGTTGCTGTGCTGGATCTCGTACTTTTGTGCACGAGCGTGTATACGACGAGTTTGTCGAGAAATCGAGGGCACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAGGGTCCTCAGATTGACTCGGAGCAATTTGAAAAAGTCCTAAGATACATAAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGAGGGGATAGACTTGGGTCCAAGGGATACTTTATCCAGCCAACAGTTTTCTCAAATGTCAAGGACGATATGTTGATTGCCAAGGACGAAATCTTTGGCCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTGATTCAAAGGGCAAACTCAACTCGTTACGGTCTAGCTGCCGGAGTTTTCACTACGAACATCGACACGGCGAACACCATAACACGAGGATTGCGAACTGGGACCGTGTGGATCAATTGCTTCGATGTATTTGACGCTGCAATACCGTTTGGCGGGTATAAGATGAGCGGAATAGGAAGGGAGAAGGGAATTTACAGCCTCCATAACTACTTGCAGGTGAAGGCTGTGGTTACTCCATTGAAGAATCCAGCATGGTTGTGA 1653 46.94 MAARRGISSLLSRSLFSSSSSSSSSSGHGFCSLLQSYGRVSRFHGRGNRFSTSALAEEELVTPPVKISYTQNLINGQFVDAVSGKTFPTYDPRTGEVIAHVAEGEAEDVNRAVSAARKAFDEGPWPKMTAYERSRILLRFADLVEKHSTELAALETWNNGKPYEQSLKSEVPVIVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVNKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKSRARAQRRVVGDPFKKGVEQGPQIDSEQFEKVLRYIKSGIESDATLECGGDRLGSKGYFIQPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANSTRYGLAAGVFTTNIDTANTITRGLRTGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLHNYLQVKAVVTPLKNPAWL 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5397220 5400108 + Lag0034224.1 Lac3g0696 601118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0696 550 FunFam Mitochondrial aldehyde dehydrogenase 2 322 511 - -
Lac3g0696 550 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 322 511 IPR016163 GO:0016620(InterPro)
Lac3g0696 550 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 344 355 IPR016160 GO:0016491(InterPro)
Lac3g0696 550 CDD ALDH_F2BC 67 542 - -
Lac3g0696 550 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 74 341 - -
Lac3g0696 550 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 84 540 IPR016162 GO:0016491(InterPro)
Lac3g0696 550 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 316 323 IPR029510 GO:0016491(InterPro)
Lac3g0696 550 Pfam Aldehyde dehydrogenase family 79 540 IPR015590 GO:0016491(InterPro)
Lac3g0696 550 FunFam Aldehyde dehydrogenase, putative 512 538 - -
Lac3g0696 550 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 62 542 - GO:0004029(PANTHER)
Lac3g0696 550 SUPERFAMILY ALDH-like 66 544 IPR016161 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0696 Lac-Chr3:5397220 Lac6g1384 Lac-Chr6:14939258 7.80E-257 dispersed
Lac3g0696 Lac-Chr3:5397220 Lac11g0932 Lac-Chr11:10144511 1.30E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0696 K00128 - csv:101209430 999.193