Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0697 ATGAAGGAGAACAATGATGGGTTTGTGCGGGCGGATCAGATTGATCTGAAGAGCTTGGATGAGCAGCTTGAGAGGCATCTTAGCAGAGCCTTGACGATGGAGAAGAACAAGAAGAAAGATGAAGATGGAAATAGCTTTCTCACTTCCGCAGCCATCGCTCGCAGTAGGTCTACTAAAGTCGCCGCTAAGGAGCGGCAGGAGTGGGAGATCGATCCGTCTAAACTGATAATCAAGAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCATCGCGGCGTTTACGACGGACTTGATGTCGCCGTCAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGGACTGAAGCTGAAATTGCTTCACTAAGGGCAGCTTTTAAACAGGAAGTTGCTGTTTGGCATAAGCTAGAGCATCCCAATGTAACTAAGTTTATAGGGGCAACAATGGGCTCAGCAGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGTAACATATGCTGTGTTGTGGTGGAATACCTTGCCGGAGGTGCCCTTAAAACTTATCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGCTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAATATGTTGTTGGATAAAACACGTACAGTCAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAACGACATGACTGGGGAGACCGGGACACTCGGTTACATGGCTCCTGAGGTTCTCAATGGCAACCCATATAACAGGAAGTGTGATGTGTACAGCTTCGGTATCTGCCTGTGGGAAATTTATTGCTGTGACATGCCATATCCTGACCTTAGTTTCTCCGAAGTGACGTCTGCTGTGGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCGAGCTCTCTAGCAAATGTAATGAAGCGTTGCTGGGATGCGACCCCGGACAAGCGGCCCGAGATGGATGAAGTAGTTTCCATGTTGGAGGCCATTGACACATCCAAGGGTGGAGGTATGATCCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGGCCCTAA 1137 47.67 MKENNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDGNSFLTSAAIARSRSTKVAAKERQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKTYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5403620 5406891 - Lag0034225.1 Lac3g0697 601119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0697 378 CDD STKc_MAP3K-like 81 349 - -
Lac3g0697 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0697 378 Pfam Protein tyrosine and serine/threonine kinase 77 349 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0697 378 Gene3D Phosphorylase Kinase; domain 1 63 158 - -
Lac3g0697 378 SMART serkin_6 75 352 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0697 378 FunFam Serine/threonine-protein kinase HT1 175 360 - -
Lac3g0697 378 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0697 378 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 54 350 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Lac3g0697 378 FunFam Kinase suppressor of Ras 1 64 159 - -
Lac3g0697 378 Coils Coil 16 36 - -
Lac3g0697 378 Gene3D Transferase(Phosphotransferase) domain 1 176 365 - -
Lac3g0697 378 SUPERFAMILY Protein kinase-like (PK-like) 59 349 IPR011009 -
Lac3g0697 378 PRINTS Tyrosine kinase catalytic domain signature 172 185 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0697 378 PRINTS Tyrosine kinase catalytic domain signature 320 342 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0697 378 PRINTS Tyrosine kinase catalytic domain signature 276 298 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0697 378 PRINTS Tyrosine kinase catalytic domain signature 210 228 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0697 Lac-Chr3:5403620 Lac4g2252 Lac-Chr4:42223989 1.40E-148 dispersed
Lac3g0697 Lac-Chr3:5403620 Lac8g0305 Lac-Chr8:3607110 1.40E-188 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86068 PF07714 PK_Tyr_Ser-Thr 3.80E-63 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0697 - - - 0.0