Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0699 ATGGCTGCTCGAGGCGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCAACTAGTGTAGTAATAGTTTCGATCAATTGGAAGAAGTATCATACTTGTGTACATCCTTTGCATATATGGATTGTGGTTGATTATACTACCGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTTCTTGCGCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTACTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTATTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGACAAGAAACAAGGGTGATGAGCCAAGATGCTGCTACATACCATCCCGGACTTTACTTGACTCCGGCTCAGAGGGAAGCCGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGCTGTATCGACGAGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGTTGCTCAGTGTTCCCAAACCTTGACCTCAGTGCTCTGTCCAATCTTCGTTCTGATACTGATAGGCCATCTGCAAGTGTTGTCACGGCCAATCGTTATGTGAGATCTCAACCTTCCAGCCAAAGTTGCCAAAGTTATCTGGTGAGATTGCAGGGTCTGCTTCGACCTGTTCGCACGGAAAATATTGGTGCACACAGTGATTTAGAGTCTGCTAGTGCTTTGGAAGCTGCTGAGAATGGGTCTGCCTATGACCAAACTATACCAGAACGGTCTCCTGTAAGACCCATGTCTTTGAGTCAGTCCACATCACAACTCTAG 1143 45.76 MAARGVDFKWYDGFFLSMLATSVVIVSINWKKYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMSQDAATYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVTANRYVRSQPSSQSCQSYLVRLQGLLRPVRTENIGAHSDLESASALEAAENGSAYDQTIPERSPVRPMSLSQSTSQL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5436827 5440597 + Lag0034227.1 Lac3g0699 601121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0699 380 Pfam Ring finger domain 234 276 IPR001841 -
Lac3g0699 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Lac3g0699 380 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Lac3g0699 380 SUPERFAMILY RING/U-box 216 284 - -
Lac3g0699 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Lac3g0699 380 SMART ring_2 235 275 IPR001841 -
Lac3g0699 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Lac3g0699 380 MobiDBLite consensus disorder prediction 354 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0699 Lac-Chr3:5436827 Lac7g2722 Lac-Chr7:46334078 5.40E-07 dispersed
Lac10g0440 Lac-Chr10:3452271 Lac3g0699 Lac-Chr3:5436827 3.10E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0699 K16284 - csv:101208939 732.635