Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0772 ATGGAGAAAAGGTGTGGTTGTTGGGCTGTTTTGACTCGTACTGTTTCTGGTGTTTGCAAATCCCCTGCTTCCAAAGACTCTCCCAACACTATTCCTCGAACTAGCCTTGTTTATGATTCTGCTACTGAAACACGGTATTTGAATGCTAGCAACAGAGATCTCTGTACCCTGAACGAAGCCGAGCTAGCCTCCGAGAATGCCAATCCATCATCATCAGATAACAAAACTACAAGCAAATTGCTTCAGTTCTCTTTTCATGAGCTCAAGGCTGCAACTGGAAACTTTAGACCTGATAGTATTCTTGGGGAAGGTGGATTTGGTTTTGTCTTTAAAGGATGGATTGAAGAGAATGGCACAGCTCCTGCAAAACCCGGATCAGGAATTACAGTAGCTGTTAAGAGCTTGAAACTAGACGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCCTTTCTCGGACAACTTCACCATCCAAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCAACGTTTGCTTGTTTATGAGTTTATGAGCCGTGGAAGTCTTGAGAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCCAATAGGATAAAGATTGCCCTTGGAGCGGCAAAAGGATTGGCATTTCTTCATAATGGTCCAGTACCTGTTATCTATAGAGATTTTAAGACGTCCAACATCTTGCTTGATTCGGAATACAATGCAAAGCTTTCGGATTTTGGTTTTGCGAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTTATTGGGACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGACATCTGACATCCAAGAATGATGTTTATAGCTTCGGTGTTGTGCTTCTTGAGATCGTAACAGGGAGAAGATCCATGGACAAGAAACGTCCGAGCGGGGAACAGAACCTCGTCTCATGGGCTCGGCCATATTTAGCTGATAAGAGAAAGCTATATCATATAGTGGATCCCCGCTTGGAATTCAACTATTCCATTAAAGGGGTGCAGAAGGTCTCCCAGCTTGCTTGCAGTTGCCTCAGCAGGGATCCGAAACTACGTCCAACCATGGACGAAGTCGTGAAGATTCTGACTCCACTGCAAGATCTCAATGACCTCGCCATCCTAACGTCTCACTGCCGCTCATCTTCACAAGGGAGGCGCAAGAAGAAACCTGAAGGCCTCACCTACTCTCAAAGCTTCAGAGCATCTCCATTGAACACTGGAAAGCAGCATGTAAGGTGA 1275 44.94 MEKRCGCWAVLTRTVSGVCKSPASKDSPNTIPRTSLVYDSATETRYLNASNRDLCTLNEAELASENANPSSSDNKTTSKLLQFSFHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKLDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDQRLLVYEFMSRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHNGPVPVIYRDFKTSNILLDSEYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYHIVDPRLEFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEVVKILTPLQDLNDLAILTSHCRSSSQGRRKKKPEGLTYSQSFRASPLNTGKQHVR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6186824 6189874 + Lag0034300.1 Lac3g0772 601194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0772 424 Gene3D Phosphorylase Kinase; domain 1 69 180 - -
Lac3g0772 424 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
Lac3g0772 424 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524(InterPro)
Lac3g0772 424 PANTHER OS01G0588500 PROTEIN-RELATED 69 378 IPR050823 -
Lac3g0772 424 CDD STKc_IRAK 101 377 - -
Lac3g0772 424 FunFam Probable serine/threonine-protein kinase PBL8 181 394 - -
Lac3g0772 424 FunFam Serine/threonine-protein kinase BIK1 62 180 - -
Lac3g0772 424 MobiDBLite consensus disorder prediction 407 424 - -
Lac3g0772 424 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0772 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0772 424 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0772 424 MobiDBLite consensus disorder prediction 391 424 - -
Lac3g0772 424 SUPERFAMILY Protein kinase-like (PK-like) 77 386 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0284 Lac-Chr13:2035816 Lac3g0772 Lac-Chr3:6186824 4.50E-139 dispersed
Lac3g0772 Lac-Chr3:6186824 Lac8g2666 Lac-Chr8:44158979 7.90E-140 dispersed
Lac3g0772 Lac-Chr3:6186824 Lac6g2910 Lac-Chr6:46718557 8.80E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86070 PF07714 PK_Tyr_Ser-Thr 1.90E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0772 - - - 0.0