Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0792 ATGTCGAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTCTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATTGTGACAGTCCGATGTGGGCACTGCACGAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTGTACACTTCTAGTGGACCTGATTTTCAGGCTGATTTTGGATCTTCATCCAAATGTAACAACAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGAGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAACCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAATAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTTGATGATGGTTCTGAGCGTTTAATGTCAAGGGCTGCTCTATTAAACAAATGA 573 43.8 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQADFGSSSKCNNNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMSRAALLNK 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6309430 6312375 + Lag0034320.1 Lac3g0792 601214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0792 190 CDD HMG-box_SF 118 154 - -
Lac3g0792 190 PANTHER PROTEIN YABBY 6-RELATED 9 173 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Lac3g0792 190 Gene3D High mobility group box domain 103 159 IPR036910 -
Lac3g0792 190 FunFam axial regulator YABBY 5-like 102 160 - -
Lac3g0792 190 SUPERFAMILY HMG-box 106 157 IPR036910 -
Lac3g0792 190 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0792 K25796 - - csv:101215951 361.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0189 Lac-Chr13:1332243 Lac3g0792 Lac-Chr3:6309430 1.10E-30 dispersed
Lac3g0792 Lac-Chr3:6309430 Lac9g2746 Lac-Chr9:45626609 1.30E-49 dispersed
Lac3g0792 Lac-Chr3:6309430 Lac6g2925 Lac-Chr6:46896306 4.00E-75 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g2250 . 78 235 C2C2-YABBY Transcription Factor Family AT2G45190 58.7 2.1e-43 172.9
Lac9g2746 . 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 67.9 6.8e-56 214.5
Lac11g2250 . 34 225 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 3.5e-44 175.6
Lac3g0792 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 8.7e-43 171.0
Lac11g2250 . 45 234 C2C2-YABBY Transcription Factor Family AT4G00180 54.8 5.8e-51 198.4
Lac13g0189 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.7 1.7e-39 160.6
Lac3g0792 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 1.8e-63 239.6
Lac6g2925 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.5e-62 236.5
Lac9g2746 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 60.9 2.5e-49 192.6
Lac11g2250 . 34 198 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 5.4e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23608 PF04690 YABBY 8.20E-70 CL0114 Lac TF