Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0792 ATGTCGAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTCTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATTGTGACAGTCCGATGTGGGCACTGCACGAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTGTACACTTCTAGTGGACCTGATTTTCAGGCTGATTTTGGATCTTCATCCAAATGTAACAACAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGAGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAACCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAATAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTTGATGATGGTTCTGAGCGTTTAATGTCAAGGGCTGCTCTATTAAACAAATGA 573 43.8 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQADFGSSSKCNNNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMSRAALLNK 190
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 6309430 6312375 + Lag0034320.1 Lac3g0792 601214
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0792 190 CDD HMG-box_SF 118 154 - -
Lac3g0792 190 PANTHER PROTEIN YABBY 6-RELATED 9 173 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Lac3g0792 190 Gene3D High mobility group box domain 103 159 IPR036910 -
Lac3g0792 190 FunFam axial regulator YABBY 5-like 102 160 - -
Lac3g0792 190 SUPERFAMILY HMG-box 106 157 IPR036910 -
Lac3g0792 190 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0189 Lac-Chr13:1332243 Lac3g0792 Lac-Chr3:6309430 1.10E-30 dispersed
Lac3g0792 Lac-Chr3:6309430 Lac9g2746 Lac-Chr9:45626609 1.30E-49 dispersed
Lac3g0792 Lac-Chr3:6309430 Lac6g2925 Lac-Chr6:46896306 4.00E-75 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23608 PF04690 YABBY 8.20E-70 CL0114 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0792 K25796 - csv:101215951 361.688