Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0792 | ATGTCGAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTCTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATTGTGACAGTCCGATGTGGGCACTGCACGAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTGTACACTTCTAGTGGACCTGATTTTCAGGCTGATTTTGGATCTTCATCCAAATGTAACAACAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGAGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAACCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAATAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTTGATGATGGTTCTGAGCGTTTAATGTCAAGGGCTGCTCTATTAAACAAATGA | 573 | 43.8 | MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQADFGSSSKCNNNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMSRAALLNK | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6309430 | 6312375 | + | Lag0034320.1 | Lac3g0792 | 601214 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0792 | 190 | CDD | HMG-box_SF | 118 | 154 | - | - | |
Lac3g0792 | 190 | PANTHER | PROTEIN YABBY 6-RELATED | 9 | 173 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Lac3g0792 | 190 | Gene3D | High mobility group box domain | 103 | 159 | IPR036910 | - | |
Lac3g0792 | 190 | FunFam | axial regulator YABBY 5-like | 102 | 160 | - | - | |
Lac3g0792 | 190 | SUPERFAMILY | HMG-box | 106 | 157 | IPR036910 | - | |
Lac3g0792 | 190 | Pfam | YABBY protein | 8 | 164 | IPR006780 | GO:0007275(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0189 | Lac-Chr13:1332243 | Lac3g0792 | Lac-Chr3:6309430 | 1.10E-30 | dispersed | |
Lac3g0792 | Lac-Chr3:6309430 | Lac9g2746 | Lac-Chr9:45626609 | 1.30E-49 | dispersed | |
Lac3g0792 | Lac-Chr3:6309430 | Lac6g2925 | Lac-Chr6:46896306 | 4.00E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23608 | PF04690 | YABBY | 8.20E-70 | CL0114 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac3g0792 | K25796 | - | csv:101215951 | 361.688 |