Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0800 ATGCATTCCTCTGCTTGCTATGAATTGGCTCCAACATTATTTCGCAATCCCAAGTTTTTCTTCTTGTCGTTCAGATCGTCGTCTGTGAACAATCGCGGCGCGGAGTTGTGTTTTCTTCTGGGAAATGCGATCATGAAGCGACTTTCTAGAAAAGTTGGGAAGTATGAGGTAGGGCGGACTGTTGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCACGCAACACGGAGACGGGGGAGGCTGTGGCTATGAAAATTTTGGCCAAGAGTAGCATTCTCAAGCACAAAATGGTAGAACAGATCAAGAGGGAGATATCGATAATGAAAATTGTCAGGCATCCACATATTGTGAGACTGCATGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTCCAAAAGAAGCTTCCCGAAATTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGAAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCTCTGTCTCAACAAGGCGTTGAACTGCTTTACACCACATGTGGAACTCCCAATTATGTTGCACCTGAGGTTCTTGGAGGTCATGGTTATGATGGTGCAGCTGCGGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGACATCTTCCATTTTCAGAGACAGACCTCCCCACCCTAAACAAGAAGATAAATGCAGCAGAGTATTCCTGCCCCTACTGGTTTTCATCTGGTGCGAAGTCCTTGATACAAAAGATCCTTGATCCAAATCCTAAAACTCGGTTTCGGATAGAAGAAATTAGAAAAGATCCTTGGTTCAGAAGAAACTACATCCCTGCTAAATTAGGAGAAGATGAAGAAGTAAACTTGGATGATGTTCAGGCTGTTTTTGATGACATTGAGGAAGAATATGTTGCTGATCAGTCAGAAAAAAATGACGATGGTCCTTTGATAATGAATGCATTTGAGATGATAACGTTATCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACAATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCTAACTTTATAATGTCCACCATTGAAGCTGTAGCAGAAGCAATGGGTTTAAATGTCCACACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGTTGGACAGTTTGCAGCTGTACTGGAGGTATACGAAGTGGCGCCATCACTTTTTATGGTGGATGTTCGCAAAGCTGCTGGAGATACTCTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTAGAAAACATAATCTGGAAACCATCTGAGAGTGTGGGGAACTGA 1446 42.6 MHSSACYELAPTLFRNPKFFFLSFRSSSVNNRGAELCFLLGNAIMKRLSRKVGKYEVGRTVGEGTFAKVKFARNTETGEAVAMKILAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPEIESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADENLKVSDFGLSALSQQGVELLYTTCGTPNYVAPEVLGGHGYDGAAADIWSCGVILYVLMAGHLPFSETDLPTLNKKINAAEYSCPYWFSSGAKSLIQKILDPNPKTRFRIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVQAVFDDIEEEYVADQSEKNDDGPLIMNAFEMITLSQGLNLSPLFDRRQDNIKRQTRFVSRKPANFIMSTIEAVAEAMGLNVHTRNFKTRLERRTGHRVGQFAAVLEVYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPSESVGN 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6352637 6356974 + Lag0034328.1 Lac3g0800 601222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0800 481 ProSitePatterns Protein kinases ATP-binding region signature. 61 93 IPR017441 GO:0005524(InterPro)
Lac3g0800 481 FunFam Non-specific serine/threonine protein kinase 48 350 - -
Lac3g0800 481 Gene3D Transferase(Phosphotransferase) domain 1 135 316 - -
Lac3g0800 481 FunFam Non-specific serine/threonine protein kinase 348 474 - -
Lac3g0800 481 Pfam Protein kinase domain 55 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0800 481 CDD CIPK_C 355 470 - -
Lac3g0800 481 Gene3D Kinase associated domain 1, KA1 348 474 - -
Lac3g0800 481 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 47 459 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac3g0800 481 ProSiteProfiles NAF domain profile. 349 373 IPR018451 GO:0007165(InterPro)
Lac3g0800 481 Gene3D Phosphorylase Kinase; domain 1 45 134 - -
Lac3g0800 481 SMART serkin_6 55 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0800 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0800 481 Pfam NAF domain 351 410 IPR004041 GO:0007165(InterPro)
Lac3g0800 481 SUPERFAMILY Protein kinase-like (PK-like) 52 328 IPR011009 -
Lac3g0800 481 ProSiteProfiles Protein kinase domain profile. 55 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0800 481 FunFam Non-specific serine/threonine protein kinase 46 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0800 Lac-Chr3:6352637 Lac9g2932 Lac-Chr9:47112424 1.10E-145 dispersed
Lac3g0800 Lac-Chr3:6352637 Lac6g1034 Lac-Chr6:9430309 2.40E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86072 PF00069 Pkinase 7.20E-72 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0800 - - - 0.0