Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0800 | ATGCATTCCTCTGCTTGCTATGAATTGGCTCCAACATTATTTCGCAATCCCAAGTTTTTCTTCTTGTCGTTCAGATCGTCGTCTGTGAACAATCGCGGCGCGGAGTTGTGTTTTCTTCTGGGAAATGCGATCATGAAGCGACTTTCTAGAAAAGTTGGGAAGTATGAGGTAGGGCGGACTGTTGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCACGCAACACGGAGACGGGGGAGGCTGTGGCTATGAAAATTTTGGCCAAGAGTAGCATTCTCAAGCACAAAATGGTAGAACAGATCAAGAGGGAGATATCGATAATGAAAATTGTCAGGCATCCACATATTGTGAGACTGCATGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTCCAAAAGAAGCTTCCCGAAATTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGAAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCTCTGTCTCAACAAGGCGTTGAACTGCTTTACACCACATGTGGAACTCCCAATTATGTTGCACCTGAGGTTCTTGGAGGTCATGGTTATGATGGTGCAGCTGCGGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGACATCTTCCATTTTCAGAGACAGACCTCCCCACCCTAAACAAGAAGATAAATGCAGCAGAGTATTCCTGCCCCTACTGGTTTTCATCTGGTGCGAAGTCCTTGATACAAAAGATCCTTGATCCAAATCCTAAAACTCGGTTTCGGATAGAAGAAATTAGAAAAGATCCTTGGTTCAGAAGAAACTACATCCCTGCTAAATTAGGAGAAGATGAAGAAGTAAACTTGGATGATGTTCAGGCTGTTTTTGATGACATTGAGGAAGAATATGTTGCTGATCAGTCAGAAAAAAATGACGATGGTCCTTTGATAATGAATGCATTTGAGATGATAACGTTATCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACAATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCTAACTTTATAATGTCCACCATTGAAGCTGTAGCAGAAGCAATGGGTTTAAATGTCCACACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGTTGGACAGTTTGCAGCTGTACTGGAGGTATACGAAGTGGCGCCATCACTTTTTATGGTGGATGTTCGCAAAGCTGCTGGAGATACTCTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTAGAAAACATAATCTGGAAACCATCTGAGAGTGTGGGGAACTGA | 1446 | 42.6 | MHSSACYELAPTLFRNPKFFFLSFRSSSVNNRGAELCFLLGNAIMKRLSRKVGKYEVGRTVGEGTFAKVKFARNTETGEAVAMKILAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPEIESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADENLKVSDFGLSALSQQGVELLYTTCGTPNYVAPEVLGGHGYDGAAADIWSCGVILYVLMAGHLPFSETDLPTLNKKINAAEYSCPYWFSSGAKSLIQKILDPNPKTRFRIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVQAVFDDIEEEYVADQSEKNDDGPLIMNAFEMITLSQGLNLSPLFDRRQDNIKRQTRFVSRKPANFIMSTIEAVAEAMGLNVHTRNFKTRLERRTGHRVGQFAAVLEVYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPSESVGN | 481 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6352637 | 6356974 | + | Lag0034328.1 | Lac3g0800 | 601222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0800 | 481 | ProSitePatterns | Protein kinases ATP-binding region signature. | 61 | 93 | IPR017441 | GO:0005524(InterPro) | |
Lac3g0800 | 481 | FunFam | Non-specific serine/threonine protein kinase | 48 | 350 | - | - | |
Lac3g0800 | 481 | Gene3D | Transferase(Phosphotransferase) domain 1 | 135 | 316 | - | - | |
Lac3g0800 | 481 | FunFam | Non-specific serine/threonine protein kinase | 348 | 474 | - | - | |
Lac3g0800 | 481 | Pfam | Protein kinase domain | 55 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac3g0800 | 481 | CDD | CIPK_C | 355 | 470 | - | - | |
Lac3g0800 | 481 | Gene3D | Kinase associated domain 1, KA1 | 348 | 474 | - | - | |
Lac3g0800 | 481 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 47 | 459 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Lac3g0800 | 481 | ProSiteProfiles | NAF domain profile. | 349 | 373 | IPR018451 | GO:0007165(InterPro) | |
Lac3g0800 | 481 | Gene3D | Phosphorylase Kinase; domain 1 | 45 | 134 | - | - | |
Lac3g0800 | 481 | SMART | serkin_6 | 55 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac3g0800 | 481 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 174 | 186 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac3g0800 | 481 | Pfam | NAF domain | 351 | 410 | IPR004041 | GO:0007165(InterPro) | |
Lac3g0800 | 481 | SUPERFAMILY | Protein kinase-like (PK-like) | 52 | 328 | IPR011009 | - | |
Lac3g0800 | 481 | ProSiteProfiles | Protein kinase domain profile. | 55 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac3g0800 | 481 | FunFam | Non-specific serine/threonine protein kinase | 46 | 134 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0800 | Lac-Chr3:6352637 | Lac9g2932 | Lac-Chr9:47112424 | 1.10E-145 | dispersed | |
Lac3g0800 | Lac-Chr3:6352637 | Lac6g1034 | Lac-Chr6:9430309 | 2.40E-169 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86072 | PF00069 | Pkinase | 7.20E-72 | CL0016 | Lac | PK |
Pathway information
