Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0807 ATGCCCAAGTTTAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCTTGGGTTTCTGAAATTCGCCACCCTTTACTGAAGAGGAGGATATGGTTGGGGACGTTTGACACGGCGGAGGAGGCGGCGAGGGCGTACGATCAAGCCGCGATTTTGATGAGCGGTCGGAATGCCAAAACCAATTTCCCGACGACCCAAGCTCCCAATGGAGACACCAATGTTGTTACAGCCAAGGGTTTGTCTGAAATATTACAGGCCAAGCTCAAGAAATGCTGCCGTACTCCGTCGCCGTCGATGACGTGCCTGAGGCTCGACACTGAGAATTCGAACATCGGTGTGTGGCAGAAGAGTGCCGGGCAGCGGTCGGCGTCCAGCTGGGTCATGACCGTCGAGCTCGGAAACAAGAAGAGCCACAACAACGACGTGGATTCTCCGATGATGGCTGTGGTTGGTTCCGATGAGTCTCTGGTGGCGGAGGAGGTGGCGGAGATTCGATCGGAGTTGGATGAAGAAGAGAGAATGGTGGCGTTGCAAATGGTGGAGGAACTGCTTCATATCAACTATGGTGATGATCCCAACGAATTGTTTGAGATTCAACAAGGGAAGGATGTTTATCTTTAG 621 52.66 MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFDTAEEAARAYDQAAILMSGRNAKTNFPTTQAPNGDTNVVTAKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKSAGQRSASSWVMTVELGNKKSHNNDVDSPMMAVVGSDESLVAEEVAEIRSELDEEERMVALQMVEELLHINYGDDPNELFEIQQGKDVYL 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6412484 6413198 + Lag0034335.1 Lac3g0807 601229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0807 206 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0807 206 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0807 206 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0807 206 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0807 206 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0807 206 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 130 IPR050913 -
Lac3g0807 206 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lac3g0807 206 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Lac3g0807 206 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0807 206 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0807 Lac-Chr3:6412484 Lac6g0607 Lac-Chr6:5159312 2.20E-26 dispersed
Lac11g0681 Lac-Chr11:7060658 Lac3g0807 Lac-Chr3:6412484 1.70E-44 wgd
Lac2g0610 Lac-Chr2:4591556 Lac3g0807 Lac-Chr3:6412484 3.20E-42 wgd
Lac3g0807 Lac-Chr3:6412484 Lac6g2931 Lac-Chr6:46959924 1.10E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23610 PF00847 AP2 2.60E-13 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0807 - - - 0.0