Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0809 ATGTTGGCTTGGTATGTGCTTGATTATTTTTCTGGGAATTCTGGCAATGATTTTGGGAGTGAAATCAGAGTTGGCTGTTGGGTTTATTCAAGGACATGTCCCAAAGCCGAGTCCATCGTACGGTCCATTGTGGAGTCGTATTTCAAGGCCGATCCCACCATTGCAGCTGGGCTGCTCAGGCTTCACTTCCACGACTGTTTTGTTCAGGGCTGCGATGGTTCGGTATTGATCATGAATGAGAATGCAGAAATAAATGCAGGGCCAAACATGGGGCTAAGAGGGTTTGAATTGGTTGATGATGCCAAAGCTCAGCTCGAAAATTTGTGCCCTGGTGTTGTTTCTTGTGCGGATATACTTGCTTTGGCTACTCGTGATGCTGTAGACTTGAGTGATGGTCCAAGTTGGTCTGTGCCCACTGGAAGAAGGGATGGAACAGTTTCAATGGCTTTCCAGGCTGAAGATCTTCCTTCTCCATTCGAGCCCATCGATGTCCATATTCAAAAGTTCGCAGACAAAGGTCTTACAGAAGAAGATCTTGTAACCTTAGTTGGCGCTCACACGATCGGACGAACGGATTGCCAACTATTCAGTTACCGTCTACAGAACTTCACTAGCACAGGGAATCCAGACCCGACGATAAACCCATCGTTCTTGACACAACTTCGAACCCTATGCCCCTTAGATGGGGATCCGTTCAGAGGAGTGGCAATGGACAAAGACAGCCAGTTGAAATTCGACAACAGCTTCTTCAAGAACTTGATGAATGGGAATGGAGTTTTGGAGTCGGACCAGAGACTTTGGAGCCACCCTTCCACGAGAGGCATTGTGCAGAACTATGCTGGCAGCTTAAGGGGATTGTTGGGCCTCAGATTCAACTATGAGTTCAAGAAAGCCATGGTTAAGTTGAGTAGCATTGATGTCAAGACTGGCACACAAGGGGAGATTAGAAAAGTTTGTTACCAGTTTAATAAGCAAAAGTGA 981 46.48 MLAWYVLDYFSGNSGNDFGSEIRVGCWVYSRTCPKAESIVRSIVESYFKADPTIAAGLLRLHFHDCFVQGCDGSVLIMNENAEINAGPNMGLRGFELVDDAKAQLENLCPGVVSCADILALATRDAVDLSDGPSWSVPTGRRDGTVSMAFQAEDLPSPFEPIDVHIQKFADKGLTEEDLVTLVGAHTIGRTDCQLFSYRLQNFTSTGNPDPTINPSFLTQLRTLCPLDGDPFRGVAMDKDSQLKFDNSFFKNLMNGNGVLESDQRLWSHPSTRGIVQNYAGSLRGLLGLRFNYEFKKAMVKLSSIDVKTGTQGEIRKVCYQFNKQK 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6446033 6449810 + Lag0034337.1 Lac3g0809 601231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0809 326 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Plant peroxidase signature 131 146 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Plant peroxidase signature 177 189 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 ProSiteProfiles Plant heme peroxidase family profile. 29 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 CDD secretory_peroxidase 29 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac3g0809 326 PANTHER PEROXIDASE 25-RELATED 28 319 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lac3g0809 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 178 188 IPR019793 -
Lac3g0809 326 Gene3D - 29 323 - -
Lac3g0809 326 FunFam Peroxidase 156 302 - -
Lac3g0809 326 SUPERFAMILY Heme-dependent peroxidases 28 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 FunFam Peroxidase 27 164 - -
Lac3g0809 326 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Haem peroxidase superfamily signature 131 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 Gene3D Peroxidase, domain 2 156 302 - -
Lac3g0809 326 Pfam Peroxidase 40 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0809 326 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0049 Lac-Chr12:585511 Lac3g0809 Lac-Chr3:6446033 7.20E-60 dispersed
Lac3g0809 Lac-Chr3:6446033 Lac4g2569 Lac-Chr4:44846509 5.80E-66 dispersed
Lac3g0809 Lac-Chr3:6446033 Lac3g0810 Lac-Chr3:6451293 1.40E-125 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0809 K00430 - csv:101214998 554.673