Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0810 ATGGAGCAAAAAGAAGCCATTTTGTTCGTTCTTTTGGGAATTCTAATGATGGGTTTGCATGTAAATGCTCAGCTTAGAACTGGGTTTTATTCTTTTTCATGTCCAAAAGTGGAGTCTATAGTGAGAGCCACAGTTGAATCGTACTTCAAATCAGATCCTACCATTGCTGCTGGGTTGTTGAGGCTTCATTTTCACGACTGTTTTGTTCAGGGATGTGATGGTTCGGTGTTGATTGCGGGTCCTTTGGCTGAGAGAAATGCTTTGCCGAACCTTGGATTGAGAGGGTTCGAAGTAATAGAAGATGCAAAAGCGCAGCTTGAAGCTGAGTGTCCCGGCGTGGTCTCTTGTGCTGATATTCTTGCTTTGGCCGCTCGAGATGCTGTTGACTTGAGCGAAGGCCCAAGTTGGGCAGTGCCGACAGGAAGAAGGGATGGGAGGATTTCTTCAAAATCTCAAGCTGGAAACTTACCTTCTCCACTCGAGTCCATCGCTGTTCACAAGAAAAAGTTTGCAGAAAAAGGCCTCGACGAAGAAGACCTTGTCACCTTACTCGGGGCTCACACCATAGGCCAAACAGATTGCCTATTCTTCCGATACCGTCTACACAACTTCACAGCCACAGGCAACTCCGATCCAACCATAAACCCATCGTTCTTGTCGGAGCTGAAAGTGCTGTGCCCTAAAGATGGAGATGCAACCAAAAGGGTGGCGTTGGACAGAGAGAGCCAGCTGAAATTCGACCTCAGTTTCTTCAAGAACATTAGAGATGGAAATGGGGTTTTGGAGTCGGACCAGAGGCTTTGGAACGACGAGTCCACGAGAACCATTGTCCACAACTATGTGAGCCCTTTAAGAGGACTTTTGGGCCTCAGATTTGACCTTAACTTTAGGAAAGCCATGATCAAGATGAGTAGCATTGAGGTCAAGACTGGTTCGCAAGGAGAGATTAGGAGAAAATGTTCTAGGTTTAATTTGTTGGAAACGAAGTAG 990 46.26 MEQKEAILFVLLGILMMGLHVNAQLRTGFYSFSCPKVESIVRATVESYFKSDPTIAAGLLRLHFHDCFVQGCDGSVLIAGPLAERNALPNLGLRGFEVIEDAKAQLEAECPGVVSCADILALAARDAVDLSEGPSWAVPTGRRDGRISSKSQAGNLPSPLESIAVHKKKFAEKGLDEEDLVTLLGAHTIGQTDCLFFRYRLHNFTATGNSDPTINPSFLSELKVLCPKDGDATKRVALDRESQLKFDLSFFKNIRDGNGVLESDQRLWNDESTRTIVHNYVSPLRGLLGLRFDLNFRKAMIKMSSIEVKTGSQGEIRRKCSRFNLLETK 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6451293 6453233 + Lag0034338.1 Lac3g0810 601232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0810 329 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Lac3g0810 329 PANTHER PEROXIDASE 25-RELATED 19 320 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lac3g0810 329 FunFam Peroxidase 28 171 - -
Lac3g0810 329 Pfam Peroxidase 41 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 SUPERFAMILY Heme-dependent peroxidases 24 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 179 189 IPR019793 -
Lac3g0810 329 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac3g0810 329 FunFam Peroxidase 157 303 - -
Lac3g0810 329 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 Gene3D Peroxidase, domain 2 157 303 - -
Lac3g0810 329 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac3g0810 329 Gene3D - 28 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0256 Lac-Chr12:2813335 Lac3g0810 Lac-Chr3:6451293 2.40E-112 dispersed
Lac12g0275 Lac-Chr12:3036809 Lac3g0810 Lac-Chr3:6451293 2.70E-87 dispersed
Lac3g0810 Lac-Chr3:6451293 Lac4g2569 Lac-Chr4:44846509 2.10E-71 dispersed
Lac9g1086 Lac-Chr9:25580087 Lac3g0810 Lac-Chr3:6451293 2.60E-58 dispersed
Lac3g0809 Lac-Chr3:6446033 Lac3g0810 Lac-Chr3:6451293 1.40E-125 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0810 K00430 - csv:101221881 559.681