Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0844 ATGGAGGGCGTCAGAAACAGAGGGGTTTTCCGGGTTTCTGTTTGTGGGCAAGAAGAGCTCGAGCAACTCTCCAGAGATGGCAGTCAGTACAGCCTCACCACTGGGATATTGCCCTCTCTCGGCGCTAGAAGCAACCGGAGAGTTAAGCTTCGTCGCTTTATCATATCGCCCTATGACCGTCGATACAGGATTTGGGAGACGTTTCTCGTTGTTTTGGTGGTATATACTGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCGCCACTCTCAGTTACGGACAATGTGGTTAATGGATTTTTTGCAGTGGATATCGTTCTCACATTCTTTGTAGCTTATCTTGATAAAGCCACCTATTTACTTGTTGATGAACCGAAGAAGATTGCTCTGAAGTATGCAAGTTCATGGCTAGTCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACAGAAGATTTCCCCTTCACCTCTCCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTCAGAAGAGTCAGTGCTCTCTTTTCCAGACTGGAAAAAGATAGGAACTATAACTACTTTTGGGTTCGATGTGCGAAACTCATTTGTGTTACTCTCTTTGCGGTTCACTGTGCCGCATGCTTCTATTACCTTATTGCTGCTCGATATCATGACCCAAAAAGGACGTGGATTGGAGCATCTATGGAGAACTTTCTTGAGCAAAGTTTGTGGATTAGATATGTCACTTCCATTTATTGGTCAATCACTACCCTAACCACTGTCGGCTATGGTGACTTGCATCCTGTGAATACAAGGGAGATGATTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAACATGACCAACTTAGTTGTACATGGGACCAGTAGAACTAGAAAATTTAGAGATACCATACAAGCGGCTTCAAGTTTTGCTCACAGGAATCAGCTTCCTCCCCGTTTGCAAGATCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAAGGATTGCAGCAGCAAGAAACTCTTGACTCCTTGCCTAAAGCCATCAGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTGGACAAGGTCTACTTGTTTCGTGGTGTTTCAAATGACCTACTTTTTCAACTGGTTTCAGAAATGAAAGCGGAGTATTTTCCTCCAAAAGAAGATGTGATTTTGCAAAATGAAGCCCCAACAGACTTCTACATTCTTGTCACGGGTGCCGTGGATTTGCTGGTTCTCAAGAATGGAGTTGAACAGGTTGTTGGAGAGGCTAAAACCGGTGAACTTTGTGGTGAGATTGGGGTATTATGTTACAGGCCACAACTATTTACAGTGCGCACTAAGCGATTGAGTCAGTTGCTGCGTCTGAATCGTACTGCTTTCCTGAATATCGTTCAATCTAATGTCGGTGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAAAGACCAAAAAGACAAGGACCCCATTATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTCAGTCTTTGTTTTGCAACACTTAGAGGAGATGACTTGCTTTTACACCAGCTTTTGAAACGAGGTCTCGATCCAAATGAATCCGACAACAACGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAATGAGAACTGTGTGCTTCTATTACTGGACTATGGAGCGGATCCCAATAGTAGAGATTCAGATGGGAATGTGCCATTGTGGGAGGCGATACTAGGTGGCCATGAGCCGGTTATTCAGCTACTTATAGACAATGGTGCTAATCTCCGATCGGGAGAGGTCGGTCACTTTGCGTGTACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTCTCCGATATGGAGGAGACGTTACGAGTGCCAAGAACAATGGAACAACAGCTTTACACGTTGCTGTTTGTGAAGACAACATTGAGATTGTCAAGTTCCTTCTTAAACAAGGAGCTGATATTGACAAACCAGACGTCCATGGATGGACTCCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATTAAAAACCTCTTCCAGACAATGAAAGAGTCGAAAACTCAATCTGTCGTCGCCATTCCTGAGAAGCAGACTGGTATTCGGTTCCTCGGAAGGTTTACAAGCGAGCCTATGATTCGCCCTCTACCTCAGGAAGGAAATGATGGTTCATGGCCGGGTCAACCTCGTCCACGGCGTAGGACAAACAACTTCAACAACTCATTGTTTGGTATCATGTCAGCAGCACAATCAGGCGATAAAGACATCCTTTTCCCTGATAACCAAACCAGAGGAGAGAACTCTGGAACCAACCCTGCAAGGGTGATAATCAGCTGTCCAGAGATGGGCGAAGTTTCCGGGAAGCTGGTGCTGCTTCCGGGCAGCTACAACGAGCTGCTTGAGATGGGTGCCAAGAAATATGGGATTGTGGCTTCAAAGGTAGTGAACATAGATGGAGCTGCCATTGAAGATATAGAGGTGATTAGGGACGGTGATCATCTTGTTTTTGTCAGCGATGGAAGAACCATATAA 2622 44.47 MEGVRNRGVFRVSVCGQEELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLDKATYLLVDEPKKIALKYASSWLVFDVISTIPSELAQKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLICVTLFAVHCAACFYYLIAARYHDPKRTWIGASMENFLEQSLWIRYVTSIYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGELCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDQKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTSLHIAASKGNENCVLLLLDYGADPNSRDSDGNVPLWEAILGGHEPVIQLLIDNGANLRSGEVGHFACTAAEQNNLQLLKEILRYGGDVTSAKNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKNLFQTMKESKTQSVVAIPEKQTGIRFLGRFTSEPMIRPLPQEGNDGSWPGQPRPRRRTNNFNNSLFGIMSAAQSGDKDILFPDNQTRGENSGTNPARVIISCPEMGEVSGKLVLLPGSYNELLEMGAKKYGIVASKVVNIDGAAIEDIEVIRDGDHLVFVSDGRTI 873
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 6773853 6779030 + Lag0034372.1 Lac3g0844 601266
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0844 873 PANTHER POTASSIUM CHANNEL AKT1 22 865 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Lac3g0844 873 Gene3D - 528 712 IPR036770 -
Lac3g0844 873 ProSiteProfiles Ankyrin repeat region circular profile. 593 620 - -
Lac3g0844 873 SUPERFAMILY cAMP-binding domain-like 305 500 IPR018490 -
Lac3g0844 873 SUPERFAMILY Ankyrin repeat 531 710 IPR036770 -
Lac3g0844 873 FunFam Potassium channel SKOR 63 301 - -
Lac3g0844 873 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 Pfam Ion transport protein 62 307 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac3g0844 873 Gene3D Jelly Rolls 344 507 IPR014710 -
Lac3g0844 873 FunFam Potassium channel KAT2 368 504 - -
Lac3g0844 873 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0844 873 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0844 873 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0844 873 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0844 873 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0844 873 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0844 873 CDD CAP_ED 380 485 IPR000595 -
Lac3g0844 873 ProSiteProfiles KHA domain profile. 804 873 IPR021789 -
Lac3g0844 873 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 Gene3D - 63 301 - -
Lac3g0844 873 Pfam KHA, dimerisation domain of potassium ion channel 804 866 IPR021789 -
Lac3g0844 873 Pfam Cyclic nucleotide-binding domain 399 485 IPR000595 -
Lac3g0844 873 ProSiteProfiles cAMP/cGMP binding motif profile. 380 482 IPR000595 -
Lac3g0844 873 ProSiteProfiles Ankyrin repeat region circular profile. 657 688 - -
Lac3g0844 873 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 MobiDBLite consensus disorder prediction 742 767 - -
Lac3g0844 873 Pfam Ankyrin repeats (3 copies) 631 707 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 Pfam Ankyrin repeats (3 copies) 532 620 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Lac3g0844 873 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Lac3g0844 873 SMART ANK_2a 593 622 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 SMART ANK_2a 624 653 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 SMART ANK_2a 657 686 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 SMART ANK_2a 527 556 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 SMART ANK_2a 560 589 IPR002110 GO:0005515(InterPro)
Lac3g0844 873 SMART cnmp_10 380 497 IPR000595 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1027 Lac-Chr10:8313170 Lac3g0844 Lac-Chr3:6773853 1.50E-177 dispersed
Lac2g0648 Lac-Chr2:4867663 Lac3g0844 Lac-Chr3:6773853 5.10E-07 dispersed
Lac3g0844 Lac-Chr3:6773853 Lac6g0415 Lac-Chr6:3378262 1.70E-285 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0844 K21867 - csv:101220784 1640.17