Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0845 | ATGAAGGGGGAAGTACAATTGAATTCCTCAATTGCCCAAAACCCTAGTGACTCTGATCCTCTGCTTGAGAATCAGCCTGATTCATCCCATGGAACCTCCGATGAAATCAAGGATGATGAGGATACTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTGGAGAGCGACGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGGTCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACGTGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGGAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTCTAGCTGTACAAACTTTAATAGCTGCAATGGGTGGTTATGCGTATATTATGGACAAAGATGGGGCGTTCAGGAATTCTTTCAGTGATGGATGGGATCGTGTTCTGTCTAAACATCCTATTCCATTTTATTATTGTATCGGGGTTCTGGCCTTCTTTGTTCTGCTTGGGTTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAATGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAAGCCTGCTTTGCTCTTGTTATTGTTTTCGTTGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCCACTATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAACTGACAAAAGAATACGTGGTGGAGGATCTTCACGGCAGTTATACCCCTCCAAAATTGGATCCTGAACATGAACAACACTTGAAAATGCTACAGCTTCTGTAA | 918 | 43.68 | MKGEVQLNSSIAQNPSDSDPLLENQPDSSHGTSDEIKDDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRVLSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGSYTPPKLDPEHEQHLKMLQLL | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6780656 | 6782923 | - | Lag0034373.1 | Lac3g0845 | 601267 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0845 | 305 | SMART | ringv_2 | 49 | 101 | IPR011016 | GO:0008270(InterPro) | |
| Lac3g0845 | 305 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 42 | 107 | IPR011016 | GO:0008270(InterPro) | |
| Lac3g0845 | 305 | CDD | RING_CH-C4HC3_MARCH | 50 | 101 | - | - | |
| Lac3g0845 | 305 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Lac3g0845 | 305 | MobiDBLite | consensus disorder prediction | 6 | 29 | - | - | |
| Lac3g0845 | 305 | SUPERFAMILY | RING/U-box | 48 | 105 | - | - | |
| Lac3g0845 | 305 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 11 | 304 | - | - | |
| Lac3g0845 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 114 | IPR013083 | - | |
| Lac3g0845 | 305 | Pfam | RING-variant domain | 50 | 100 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g2545 | Lac-Chr12:42323881 | Lac3g0845 | Lac-Chr3:6780656 | 6.20E-37 | dispersed | |
| Lac1g2862 | Lac-Chr1:49602098 | Lac3g0845 | Lac-Chr3:6780656 | 1.60E-53 | dispersed |
Pathway information