Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0857 ATGCCCTACATGCAAATGGAGCCAGAAGAGAAACATGTGATACCATCTTCTCAAATGGTGTTGAAATCCCTACATGGCTCAAAGGATGGTGAGAAGACTAGTTTATGGAAAAGGAAAGCAAAAAGGAGAGCTAAAGGACATGCCATGGAAGGACTGAAGCAAGAGGAGCTTGATCCAAATCTGGAGTTTCCCTCTTCTTCTTCCTGCAAAAGCTTAACATTTCCTAGAAGGCCAGACTTTGGCCAGCTGGGGACTAAATGCTTGGTTAAAGCCAATCACTTCCTAGCAAAAATACCTGAATCAGACATAAGCCATTATAATGTTAAGATTACCCCAGAAGTTACTTCTCGTAAAATGAAGAAGAGTATACTGACCGAGTTGGTCAAACATTATAGAAGCACAGAACTGGGGATGCGACTGCCAGTTTATGATGGAGGAAGCAACCTGTACACAGCCGGATTGCTGCCTTTCACATCAAAGGAGTTCACTGTCATTTTGGCTGATGAGGAAGAGGGGGCAACCACTCCCAGGGAACGAGAATTTAAGGTGCAGATAAAGTTTGTAACTTTGGCTAGCATGCACCAGTTACGAGAATTACTTGCCGGTAAACAAGTTAATAACCCTCAAGAAGCTTTGACCATTATTGACATCGTCTTGCGGGAGCTTCATGCCCAAAGATATATATCAGTTGGGCGATTCTTTTACACTCCTTGCATTAAGAAACCTCAGCATGTTGGGGGTGGTTTGCAAGCATGGCGTGGCTTCTATCAAAGCATCCGTCCTACTCAAATGGGATTGTCACTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTCGTCGCTCAGATTTTAAACAAAGATGTGTATTCAAGACCATTGTCCGATGCTGATCGTATCAAGGTTAAAAAAGTACTTAGAGGTGTAAAAGTTGAAGTTACACACAGAGGAAATGTACGAAGGAAATATCGAATTTCAGGACTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAGTACTTCCAAGAGATGTATGGATATACCATTCAGTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAATTATCTACCCTTGGAGGCATGTAAGATACTTAAAGGACAGAGATACACGAAAGGACTGAATGAAAAGCAAATAACTTCCTTGTTGAAGGTTTCATGCCAAAGACCCTCTGATCAAGAAATGGACATTTTACAGACTGTTCATCAGAATGCATATGAGGAAGATCCATATGCAAAAGAATTTGGAATCAGCATTGACAGCAAGCTTACATCAGTTGAAGCACGAGTTCTTCCATCTCCATGGCTAAAATTTCATGACACGGGAAAAGAAAAGGAACATCTGCCACAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTAATAAATGGAAGTGTTGTAAGATACTGGGCTTGTATCAATTTCTCACGCAACGTCCAAGAGAGCATAGCTCGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAATATCTGGCATGGAATTTAACCCAGATCCAGCAATTCCTATATACTCAGCAAGACCAGATCAAGTAAAGAAAGCCTTAAAGTTTGTATGTAGTGCAGTTTATAACAAACATGAAGGGAAAGAGTTAGAGTTACTGATAGCTATTCTTCCCGACAACAACGGCTCTTTATACGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCCCAGTGTTGTCTAACAAAGCATGTCTTCAAGAAGAGCAGACAGTACTTGGCGAATGTGTCACTTAAGATCAACGTCAAAATGGGTGGAAGGAACACTGTTCTTTTAGATGCTTTGCGGTCAAGAATTCCACTAGTCAGTGACATACCAACAATAATCTTTGGAGCTGATGTCACTCATCCAGAATCTGGAGAGGATACTCTTCCATCAATAGCTGCCGTTGTGGCTTCCCAAGATTGGCCAGAAGTTACAAAATATGCTGGATTGGTATGTGCTCAGCCTCATCGAGAAGAACTGATTCAAGATTTATTCAAAACATGGAAAGATCCTCATCGGGGCACAGTTGCTGGGGGTATGATAAGGGAGCTCTTGCTTTCATTTAAGAAGGCCACTGGACAAAAACCATTAAGGATAATATTCTACAGGGATGGTGTCAGTGAGGGTCAGTTCTACCAGGTTCTACTGCACGAACTCGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATTGTCCAAAAGCGACACCATACCAGACTTTTTGCATCCAATCACAATGATAGGAGTAGCACTGACAAGAGTGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGCCATCCGACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCAGCACATTATCATGTTCTTTGGGATGAAAACAATTTCAGTGCAGATGAAATCCAATCTCTGACTAATAACCTCTGTTACACGTATGCTCGGTGCACAAGATCAGTTTCAGTAGTGCCTCCAGCATACTACGCTCATTTAGCAGCGTACAGAGCTCGATTCTACGTGGAACCCGACGCCCAGGAGAATGCCAAAAGGTGCTGTACTCGAACCACAAATGGGTCCTGCGTCCGGCCTCTGCCTGCACTGAAAGAGAGAGTGAAAAATGTAATGTTCTATTGTTGA 2784 42.21 MPYMQMEPEEKHVIPSSQMVLKSLHGSKDGEKTSLWKRKAKRRAKGHAMEGLKQEELDPNLEFPSSSSCKSLTFPRRPDFGQLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKMKKSILTELVKHYRSTELGMRLPVYDGGSNLYTAGLLPFTSKEFTVILADEEEGATTPREREFKVQIKFVTLASMHQLRELLAGKQVNNPQEALTIIDIVLRELHAQRYISVGRFFYTPCIKKPQHVGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRPLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKKVNYLPLEACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDILQTVHQNAYEEDPYAKEFGISIDSKLTSVEARVLPSPWLKFHDTGKEKEHLPQVGQWNMMNKKVINGSVVRYWACINFSRNVQESIARGFCQQLVQMCQISGMEFNPDPAIPIYSARPDQVKKALKFVCSAVYNKHEGKELELLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDTLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDAQENAKRCCTRTTNGSCVRPLPALKERVKNVMFYC 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6868219 6873540 - Lag0034385.1 Lac3g0857 601279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0857 927 CDD PAZ_argonaute_like 280 394 - -
Lac3g0857 927 Gene3D paz domain 274 399 - -
Lac3g0857 927 ProSiteProfiles PAZ domain profile. 282 395 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac3g0857 927 CDD Piwi_ago-like 439 888 IPR045246 -
Lac3g0857 927 Gene3D - 459 632 - -
Lac3g0857 927 Pfam PAZ domain 285 411 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac3g0857 927 SMART PAZ_2_a_3 285 417 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac3g0857 927 FunFam protein argonaute 10-like 638 927 - -
Lac3g0857 927 SMART DUF1785_2 228 280 IPR014811 -
Lac3g0857 927 Pfam Argonaute linker 2 domain 424 467 IPR032472 -
Lac3g0857 927 Pfam Argonaute linker 1 domain 229 279 IPR014811 -
Lac3g0857 927 SUPERFAMILY PAZ domain 275 435 IPR036085 GO:0005515(InterPro)
Lac3g0857 927 Pfam Piwi domain 570 888 IPR003165 GO:0003676(InterPro)
Lac3g0857 927 ProSiteProfiles Piwi domain profile. 569 890 IPR003165 GO:0003676(InterPro)
Lac3g0857 927 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 77 896 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Lac3g0857 927 FunFam Protein argonaute-2 274 400 - -
Lac3g0857 927 SMART Piwi_a_2 569 890 IPR003165 GO:0003676(InterPro)
Lac3g0857 927 Pfam N-terminal domain of argonaute 86 219 IPR032474 -
Lac3g0857 927 Pfam Mid domain of argonaute 478 554 IPR032473 -
Lac3g0857 927 FunFam Argonaute 10 459 632 - -
Lac3g0857 927 Gene3D - 638 927 IPR036397 GO:0003676(InterPro)
Lac3g0857 927 SUPERFAMILY Ribonuclease H-like 561 891 IPR012337 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0040 Lac-Chr10:427453 Lac3g0857 Lac-Chr3:6868219 0.00E+00 dispersed
Lac10g2027 Lac-Chr10:28696935 Lac3g0857 Lac-Chr3:6868219 4.40E-287 dispersed
Lac13g0348 Lac-Chr13:2492529 Lac3g0857 Lac-Chr3:6868219 2.10E-167 dispersed
Lac3g0857 Lac-Chr3:6868219 Lac9g2938 Lac-Chr9:47157603 2.00E-140 dispersed
Lac12g0820 Lac-Chr12:8511676 Lac3g0857 Lac-Chr3:6868219 6.00E-137 transposed
Lac3g0857 Lac-Chr3:6868219 Lac7g0694 Lac-Chr7:5568726 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0857 K11593 - csv:101213206 1769.59