Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0862 ATGGCTGCAGTTTCTTACTTTTCAAGCCGCCTCCCCATTTCTCTAATTTCACTTCCCCTTCTTCTCCTTCTTCTTCTTCTTCTTCATTCTGTTCGATCGGAGCCCTCCGCCGACAAGGCAGCGCTTCTCGATTTCTTCAACAGAACCCCCCATGAGAATCGCCTTCAATGGAATGCTTCCGCCTCTGCTTGTACTTGGGTTGGAGTTGTCTGTGATGACAGTCAGTCCTTTGTTTTTGCTCTCCGGTTGCCTGGTGTTGGACTTGTTGGCCCGATTCCGGCCAATACTCTCGGCCGGTTGAATCGGCTGCGAGTTCTGAGTCTCCGGTCTAATAGACTCTCTGGGAGTTTGCCGGCGGATTTTTCCAATTTGACATTTCTTCGGAGTCTTTATCTTCAGGACAACGAGCTTTCCGGTGAGTTTCCGGTGAGTGTGACTCAGTTGACTCGGGTGACTCGTCTCGACCTCTCGTCCAACAATTTCTCTGGTTCGATTCCGTTTTCGGTCAATAATTTGACCCATTTGAGTGGGCTTTTTCTGGAGAATAATGGGTTTTCGGGTTCTTTGCCGAGTATTCCCGCGATTAATTTAACGAGCTTCAATGTCTCGAATAATCAGCTCAATGGATCCATTCCCGAAACTTTATCGAAATTCTCTGCTGCATCTTTCGCTGGAAATTTAGCGCTCTGCGGTGGTCCGTTACCGTCGTGCAACCCGTTTTTTCCGTCCCCTGCTCCGTCGCCGACGTCCGCCGTGAAACCCCCACAAATTCCCGTTGAGAAGAAGTCGAAAAAGCTCTCCATCGCCGCCATTGTCGGAATCGTAGTCGGCGCTGCTTTCGTTGCGTTTGTATTGCTGTTCTTGCTCCTATTTTGCCTCCGGAAGCGCGAGCGTCGGCAACCGGCGAAGCCGCCGAGTACGGTGGTTACTGCTCGATCTGTGCCGGCGGAGGCGGGCACATCGTCTTCGAAAGACGACATCACCGGCGGATCGGTGGAGGCGGAGAAAAACAGATTAGTGTTCTTCGAAGGTGGGGTTTACAGCTTCGATTTGGAGGACCTGTTGAGGGCTTCGGCGGAGGTTCTGGGAAAAGGAAGCGTCGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTCGTCGTTAAGAGATTGAAAGACGTCGTAATGACGAAGAAGGAATTCGAAACGCAAATGGAATCTCTGGGAAATGTGAAACATGAAAATGTGGTTCCTCTCAGAGCCTTCTACTTTTCCAGAGATGAGAAATTGCTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCCGCTTCACTTCACGGTAGTAGAGGATCTGGCCGTACGCCACTTGACTGGGACAACCGGATGAAAATCGCATTAAACGCAGCAAGAGGACTGGCTCACCTCCACGTGTCGGGAAAACTCGTCCACGGCAACATCAAATCGTCGAACATCCTCCTCCGCCCCAACCACGACGCCGCCGTCTCCGACTTCGGCCTCAACCCTCTCTTCGGCGCCTCGACGCCGCCGATTCGGATCGCCGGATACCGCGCGCCGGAGGTGGTCGAAACCCGGAAGGTTACCTTCAAATCCGACGTGTACAGTTTTGGCGTGTTGCTATTGGAGCTTTTGACCGGAAAATCGCCGAATCAGGCGTCGTTGGGTGAAGAAGGAATCGATCTTCCGCGGTGGGTCCAGTCGGTGGTCCGAGAGGAATGGACGGCGGAGGTTTTTGATGTGGAATTGATGAGGTACCACAATATCGAAGAAGAAATGGTTCAATTGTTACAAATTGCGATGGCTTGTGTCGCCACCGTGCCGGACCAGCGGCCGTCGATGCAGGAGGTGGTTCGCATGATTGAGGATTTGAACCGGGTGGAGACCGACGACGGCTTACGGCCGTCGTCCGATGACCCCTCGAAAGGATCGGAGGGCCAAACCCCGCCGCAGGAGTCCAGAACCACCCCTCCCGGAGCCGGCGGACCACCGTAG 1995 53.58 MAAVSYFSSRLPISLISLPLLLLLLLLLHSVRSEPSADKAALLDFFNRTPHENRLQWNASASACTWVGVVCDDSQSFVFALRLPGVGLVGPIPANTLGRLNRLRVLSLRSNRLSGSLPADFSNLTFLRSLYLQDNELSGEFPVSVTQLTRVTRLDLSSNNFSGSIPFSVNNLTHLSGLFLENNGFSGSLPSIPAINLTSFNVSNNQLNGSIPETLSKFSAASFAGNLALCGGPLPSCNPFFPSPAPSPTSAVKPPQIPVEKKSKKLSIAAIVGIVVGAAFVAFVLLFLLLFCLRKRERRQPAKPPSTVVTARSVPAEAGTSSSKDDITGGSVEAEKNRLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKKEFETQMESLGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSASLHGSRGSGRTPLDWDNRMKIALNAARGLAHLHVSGKLVHGNIKSSNILLRPNHDAAVSDFGLNPLFGASTPPIRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEDLNRVETDDGLRPSSDDPSKGSEGQTPPQESRTTPPGAGGPP 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6916549 6919063 - Lag0034390.1 Lac3g0862 601284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0862 664 MobiDBLite consensus disorder prediction 302 329 - -
Lac3g0862 664 Gene3D Ribonuclease Inhibitor 36 194 IPR032675 -
Lac3g0862 664 Gene3D Ribonuclease Inhibitor 195 240 IPR032675 -
Lac3g0862 664 ProSiteProfiles Protein kinase domain profile. 356 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0862 664 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Lac3g0862 664 Pfam Leucine Rich Repeat 102 124 IPR001611 GO:0005515(InterPro)
Lac3g0862 664 Pfam Leucine Rich Repeat 196 217 IPR001611 GO:0005515(InterPro)
Lac3g0862 664 Pfam Leucine Rich Repeat 127 147 IPR001611 GO:0005515(InterPro)
Lac3g0862 664 Pfam Leucine Rich Repeat 151 172 IPR001611 GO:0005515(InterPro)
Lac3g0862 664 PANTHER OS05G0588300 PROTEIN 20 631 IPR050994 -
Lac3g0862 664 MobiDBLite consensus disorder prediction 313 328 - -
Lac3g0862 664 FunFam Probable inactive receptor kinase RLK902 35 193 - -
Lac3g0862 664 Pfam Protein tyrosine and serine/threonine kinase 360 620 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0862 664 MobiDBLite consensus disorder prediction 640 655 - -
Lac3g0862 664 CDD STKc_IRAK 362 624 - -
Lac3g0862 664 SUPERFAMILY Protein kinase-like (PK-like) 360 621 IPR011009 -
Lac3g0862 664 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 431 633 - -
Lac3g0862 664 SUPERFAMILY L domain-like 57 218 - -
Lac3g0862 664 Gene3D Phosphorylase Kinase; domain 1 324 430 - -
Lac3g0862 664 MobiDBLite consensus disorder prediction 625 664 - -
Lac3g0862 664 FunFam pollen receptor-like kinase 1 326 430 - -
Lac3g0862 664 Gene3D Transferase(Phosphotransferase) domain 1 431 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0300 Lac-Chr10:2302278 Lac3g0862 Lac-Chr3:6916549 1.40E-132 dispersed
Lac10g1651 Lac-Chr10:17994585 Lac3g0862 Lac-Chr3:6916549 7.90E-149 dispersed
Lac13g0520 Lac-Chr13:3812849 Lac3g0862 Lac-Chr3:6916549 7.90E-102 dispersed
Lac13g1198 Lac-Chr13:10665925 Lac3g0862 Lac-Chr3:6916549 1.00E-69 dispersed
Lac3g0862 Lac-Chr3:6916549 Lac9g2320 Lac-Chr9:42535624 7.50E-137 dispersed
Lac10g1174 Lac-Chr10:9961395 Lac3g0862 Lac-Chr3:6916549 3.60E-48 transposed
Lac1g2876 Lac-Chr1:49700802 Lac3g0862 Lac-Chr3:6916549 8.30E-42 transposed
Lac3g1245 Lac-Chr3:10611530 Lac3g0862 Lac-Chr3:6916549 4.60E-37 transposed
Lac4g2022 Lac-Chr4:39804378 Lac3g0862 Lac-Chr3:6916549 4.60E-57 transposed
Lac1g2432 Lac-Chr1:45792759 Lac3g0862 Lac-Chr3:6916549 3.20E-47 wgd
Lac3g0862 Lac-Chr3:6916549 Lac6g2971 Lac-Chr6:47280640 1.10E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86074 PF00069 Pkinase 2.20E-36 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0862 - - - 0.0