Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0886 ATGAATCCTAACTCCAATTTCATCTTCTTCTTCAACCTCTCCCTCCTCCTCCTCCTCCTCCGCCTCGCCGCCGCCCTCCCCACCGTCGGCCATGGCGCCCTCTCCGACGCCGAAGCTCTCTACATCCGCCACCGCCAGCTTCTCTACTACAGAGACGAGTTCGGCGACCGTGGCGAGCTTGTCACCGTCGACCCATCTCTCGTCTTCGAAAATGAAAGGATCAGAAACGCCTACATTGCCCTTCAGGCTTGGAAACTAGCCATTTTATCCGACCCTCTGAATCAAACTTCCAATTGGGTCGGATCGGATGTTTGCAGCTACACCGGCGTCTACTGTGCTCCCGCATTGGACAACCCCAAGATCCGCACCGTCGCCGGAATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCCGAAGAGCTCGGTTTACTTGCGGATCTTGCATTGTTCCACATCAACTCGAACAGATTCTGCGGCACTGTACCTCACAAATTTGACCGTCTCAAGCTGCTTTACGAATTGGATCTCAGTAATAATCGGTTCGCCGGGAAGTTTCCCGATGTCGTTCTCAAACTTCCGACGCTCAAGTTCTTGGATCTGCGGTTCAACGAGTTTGAAGGCAATGTGCCCAGAGAGCTGTTCGATAAAGATTTGGACGCGATTTTTATTAACCACAACAGGTTCAGATTCGAACTGCCGGATAATTTCGGGAACTCGCCGGTGTCGGTGATTGTGCTTGCGAGTAACAAGTTCCATGGGTGTTTGCCTGCGAGCTTGGGCAACATGACGAGGCTGAATGAGATCATTATGATGAACAATGGGCTTAATTCCTGTTTGCCGCCGGAAATTGGGAAGTTGAAGAACTTGACGGTGTTCGATGTTAGTTTCAATGAGTTGGTGGGTCCTTTGCCGGAGACTTTTGGAGGGCTTGTGAGTTTGGAGCAACTCAATGTGGCTAGTAATTTTCTCTCTGGGAAGATTCCGGAGAGTATTTGTGAGTTGCCTAAGCTTCTAAATTTCACGTTCTCGAATAACTTCTTTACCGGGGAGCCGCCGGCTTGTTTGAGTGTTCGGGACTTCAGTGATCGGAGGAATTGCTTGCCCGGACGACCGGCGCAGCGCCCGAGTGGGCAATGTAAGTCGTTCTTGTCGAAGCCTGTTGATTGTAATGCGTTTAAATGCGGTGGTTCTTCTTCTGGTTCCCCTTCTTCTCCGTTCACTCCTCCGGTGGTTTCGCCCACTTCGCCGCCATCGCCGTCTCAGTCCCCGAATACACCGCCGGCACCGCCATTGTCGCCCCATTTTCCACCGTCGCCGCCTTCTTCCCCATCTACGCCATCGCAGCCGTCAGCACCACCACTGATTTCTTCTCCGCCGTCGCCTTCATCTCCAACTACACCTACAACCCCTTCATCGCCGCCCCATTTTCCCTCTCCCTCTGCGCCGTCGCCTTCATCTCCACCTCAAGGCCATGCTCCGCCGTCATTACCCTCACCTTCATCGCCGCCACAAGGTCATACTCCGCCGGCATTAGCTCCACCGTCTGAGCCCTCACCAACGTCGCCGCCACAAGGCCATACTCCGTCAGCTCCACCTTCACCGTCCGAGCCAACACCATCATCGCCGCCTCAAGGCCACATTCCGCCGGCTCCACCTTCACCGACCAAGCCTTCGCCATCATCGCCGCCGCAAGGTCACACTCCGGGGGCTCCTCCTTCGCCGTCCGAGCCCTCACCTTCATTGCCGCCTCAAGGCCATACTCCGCCAGCTCCAACTTCACCGACCGAGCCCTCGCCATCATCGCCGCCGCAAGGCCACACTCCAGGGGCACCTCCCTCGCCGTCCGAGCCCTCACCTTCATCGCCGCCGCAAGGCCACACTCCAGGGGCACCTCCCTCGCCGTCCGAGCCCTCACCTTCATCGCCGCCTCAAGGCCACATTCCGCCGGCTGAGCCTTCTCCACCTGTAACATCATCACCACCAGCACCGCCATTACCAGTCTACACTCCGCCTCCGCCACATTTCCCTGATTTCCCTTCGCCACCATCTTCACAACCTCCAGTCTACTGCCCTCGAACCCCATATCCACCATCTCCTCCATCCTACTCCCCAACCCCACCTCACAATCACCCCTCCTCCCCTCCGCCGCCGCTACCTGTTTATTCTCCGCCTCCCCCTGTCTATACATCGCCGTCGCCACTCCCTCTCCCTTGCATACAACCTCCACCGCCTCCCCCACCAGATGTCCAATATTCAGAACCACCTCCTCCACCGCCGCCAACACAACCTTCTCCAATTCACTATAATTCCCCACCACCGCCCATCCATTACCAATCTCCACCCTCACCTTCGCCGCCTCCGGTTAGTGTGTATCCGCCGCCGTCTCCATCGCCCCCACCTCCGGACTATGAAAGCCCGCCGCCGCCTGTTGTCTACCAAAGCCCACCGCCGCCTCCAACTCCGGCATACGGTGGCCCACTGCCACCAATTTACGGGGTTCCCTACGCCTCTCCTCCGCCACCGCCCTTCTATTAA 2538 57.13 MNPNSNFIFFFNLSLLLLLLRLAAALPTVGHGALSDAEALYIRHRQLLYYRDEFGDRGELVTVDPSLVFENERIRNAYIALQAWKLAILSDPLNQTSNWVGSDVCSYTGVYCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLADLALFHINSNRFCGTVPHKFDRLKLLYELDLSNNRFAGKFPDVVLKLPTLKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLASNKFHGCLPASLGNMTRLNEIIMMNNGLNSCLPPEIGKLKNLTVFDVSFNELVGPLPETFGGLVSLEQLNVASNFLSGKIPESICELPKLLNFTFSNNFFTGEPPACLSVRDFSDRRNCLPGRPAQRPSGQCKSFLSKPVDCNAFKCGGSSSGSPSSPFTPPVVSPTSPPSPSQSPNTPPAPPLSPHFPPSPPSSPSTPSQPSAPPLISSPPSPSSPTTPTTPSSPPHFPSPSAPSPSSPPQGHAPPSLPSPSSPPQGHTPPALAPPSEPSPTSPPQGHTPSAPPSPSEPTPSSPPQGHIPPAPPSPTKPSPSSPPQGHTPGAPPSPSEPSPSLPPQGHTPPAPTSPTEPSPSSPPQGHTPGAPPSPSEPSPSSPPQGHTPGAPPSPSEPSPSSPPQGHIPPAEPSPPVTSSPPAPPLPVYTPPPPHFPDFPSPPSSQPPVYCPRTPYPPSPPSYSPTPPHNHPSSPPPPLPVYSPPPPVYTSPSPLPLPCIQPPPPPPPDVQYSEPPPPPPPTQPSPIHYNSPPPPIHYQSPPSPSPPPVSVYPPPSPSPPPPDYESPPPPVVYQSPPPPPTPAYGGPLPPIYGVPYASPPPPPFY 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7152776 7155313 - Lag0034414.1 Lac3g0886 601308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0886 845 MobiDBLite consensus disorder prediction 398 832 - -
Lac3g0886 845 Pfam Leucine rich repeat N-terminal domain 80 112 IPR013210 -
Lac3g0886 845 Gene3D Ribonuclease Inhibitor 243 377 IPR032675 -
Lac3g0886 845 Gene3D Ribonuclease Inhibitor 77 242 IPR032675 -
Lac3g0886 845 SUPERFAMILY L domain-like 86 355 - -
Lac3g0886 845 MobiDBLite consensus disorder prediction 407 832 - -
Lac3g0886 845 FunFam Leucine-rich repeat extensin-like protein 1 78 239 - -
Lac3g0886 845 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 776 IPR051582 -
Lac3g0886 845 Pfam Leucine Rich Repeat 172 190 IPR001611 GO:0005515(InterPro)
Lac3g0886 845 Pfam Leucine Rich Repeat 313 335 IPR001611 GO:0005515(InterPro)
Lac3g0886 845 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515(InterPro)
Lac3g0886 845 FunFam Leucine-rich repeat extensin-like protein 5 240 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0269 Lac-Chr2:2033572 Lac3g0886 Lac-Chr3:7152776 1.70E-47 dispersed
Lac3g0886 Lac-Chr3:7152776 Lac4g0561 Lac-Chr4:12624701 4.70E-43 dispersed
Lac12g0283 Lac-Chr12:3152159 Lac3g0886 Lac-Chr3:7152776 6.50E-16 transposed
Lac3g0886 Lac-Chr3:7152776 Lac6g2988 Lac-Chr6:47471664 7.90E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0886 - - - 0.0