Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0889 | ATGGAGAACCACTGCAATGGAAATTCTCAATCTCACGATGTTCACATACCCAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTCGTTGACTCTGTTTCAGGAAAAACTTTCGAGACGATAGATCCGAGAACCGGGGAGGTTATCACGACGGTGGCCGCCGGTGACAAAGAAGACGTCGATCTGGCCGTGAAAGCAGCCCGCCAAGCCTTCGATCATGGCCCTTGGCCCCGCATGTCCGGTTTTGAGAGGGGGAAAATTATGTTGAAACTAGCGGAATTAATAGAGGGAAACGTGGAGGAACTGGCAGCGTTGGATACGATCGATGCGGGCAAATCGTTCATGATTGGGAAGGTCGTGGACATACCGTCGTCTGCAAAAACCCTACGGTACTACGCAGGTGCAGCGGATAAAATCCACGGAGAGGTACTGAAAATGTCAAAGCCGCTTCACGGTTACACGTTATTGGAGCCGATCGGAGTGGTGGGCCACATCATACCGTGGAACTATCCGACGACCATGTTCTTCATGAAAGTGAGCCCGGCGTTGGCCGCCGGCTGCACCATGATCGTCAAGCCCGCCGAACAGACGCCGCTCTCCGCCCTCTTCTACGCCCACCTCGCCAAACTGGCTGGAATTCCAGATGGAGTACTCAACGTCGTGACTGGATTCGGTGGGACCGCAGGATCAGCCATTGCCTCCCACATGGACATTGACAAGGTTAGCTTCACAGGATCAACGAAGGTGGGAAGGCTGGTAATGCAGGCGGCAAGTGACAGTAATTTGAAGCAAGTTTCGTTGGAATTAGGAGGCAAATCGCCCCTCCTAATCTTCGATGATGCCGATGTCAATAAAGCCGCTGATCTTGCTCTCCTCGGCATTCTCCATAACAAGGGAGAAATTTGCGTGGCTAGCTCCCGAGTTCTGGTTCAAGAAGGCATTTATGACGAATTCGTTAAAAAGATAAGTGAAAAGGCAAAGTCTTGGGTTGTTGGAGACCCTTTTGATCCTAAGGTTCAATATGGACCCCAGGTGGACAAAAAGCAATTCGAGAAAGTGCTGTCATACATAGAAGAGGGTAAAAAAGAAGGAGCCACATTGCTAACAGGCGGGAAGCGCAAGGGCGAAGTGGGGTATTACATTGAGCCAACAATCTTCACAGATGTCAAGGAAGACTCACTCATTGTACAAGACGAAATCTTCGGCCCAGTCCTCTGCGTCATAAAGTTCAAGACGATCGAGGAGGGAATAAAGCGTGCAAACGACACCAAGTACGGGCTTGCAGCAGGCATAGTGACCAACAACATAGACATAGCCAACACCGTTTCGAGGTCGATCAGAGCCGGTACCATTTGGATCAACTGTTACTTCGCTTTCGACGACAGCTGTCCATTTGGAGGCTACAAGATGAGCGGGTTTGGTAGAGATCTTGGAATGCACGCTCTTCACAAGTATCTTCAAACCAAGGCCGTCGTCACTCCTTTGATCAACACTCCTTGGCTTTGA | 1509 | 49.97 | MENHCNGNSQSHDVHIPKIKFTKLFINGQFVDSVSGKTFETIDPRTGEVITTVAAGDKEDVDLAVKAARQAFDHGPWPRMSGFERGKIMLKLAELIEGNVEELAALDTIDAGKSFMIGKVVDIPSSAKTLRYYAGAADKIHGEVLKMSKPLHGYTLLEPIGVVGHIIPWNYPTTMFFMKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGFGGTAGSAIASHMDIDKVSFTGSTKVGRLVMQAASDSNLKQVSLELGGKSPLLIFDDADVNKAADLALLGILHNKGEICVASSRVLVQEGIYDEFVKKISEKAKSWVVGDPFDPKVQYGPQVDKKQFEKVLSYIEEGKKEGATLLTGGKRKGEVGYYIEPTIFTDVKEDSLIVQDEIFGPVLCVIKFKTIEEGIKRANDTKYGLAAGIVTNNIDIANTVSRSIRAGTIWINCYFAFDDSCPFGGYKMSGFGRDLGMHALHKYLQTKAVVTPLINTPWL | 502 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 7183118 | 7187157 | - | Lag0034417.1 | Lac3g0889 | 601311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0889 | 502 | Pfam | Aldehyde dehydrogenase family | 30 | 492 | IPR015590 | GO:0016491(InterPro) | |
| Lac3g0889 | 502 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 272 | 461 | IPR016163 | GO:0016620(InterPro) | |
| Lac3g0889 | 502 | FunFam | Aldehyde dehydrogenase, putative | 464 | 490 | - | - | |
| Lac3g0889 | 502 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 296 | 307 | IPR016160 | GO:0016491(InterPro) | |
| Lac3g0889 | 502 | FunFam | Aldehyde dehydrogenase3 | 272 | 461 | - | - | |
| Lac3g0889 | 502 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 26 | 490 | IPR016162 | GO:0016491(InterPro) | |
| Lac3g0889 | 502 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 21 | 494 | - | GO:0004029(PANTHER) | |
| Lac3g0889 | 502 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 268 | 275 | IPR029510 | GO:0016491(InterPro) | |
| Lac3g0889 | 502 | SUPERFAMILY | ALDH-like | 15 | 498 | IPR016161 | GO:0016491(InterPro) | |
| Lac3g0889 | 502 | FunFam | ALD5p Mitochondrial aldehyde dehydrogenase | 26 | 292 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g0667 | Lac-Chr3:5186874 | Lac3g0889 | Lac-Chr3:7183118 | 4.70E-99 | dispersed | |
| Lac3g0889 | Lac-Chr3:7183118 | Lac6g1384 | Lac-Chr6:14939258 | 3.20E-164 | dispersed | |
| Lac3g0889 | Lac-Chr3:7183118 | Lac11g0932 | Lac-Chr11:10144511 | 6.80E-58 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g0889 | K12355 | - | csv:101219029 | 857.825 |