Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0903 ATGTCTGCACTCACGAAGCTTCACGTGTACCCTCAAAGTTTCGATGGCCCAAGTACCAGAGATGGGCACCTGATCGGAGCTCTTGGACGGGGAGTCCACCGGTTTGGCGTTGGAGTGTCGACGAGCCGTGGTGGGTTGTGCTTGAGAAAGTGTAGATCCTTCAGAGGAGAGGATGGTGGGGATTTTGACAAGGAGGATGGTAAAGGGAGGAATCGTGGAAAATCGAGGTTAAAAGAGGTGAAAGTGAAGAAGGAAAGTCAGTTTTGGAAATTTTTGAGGTCTGGTGTTTTGGGTAAGTTTAATTTGCTTTTGGGGTCGGATGTTGAACGGGGGAAGCTTGTGGCAAATATGGAGGGTTTGTTTTCTTCGGCTGCAGTCCAAATTGGAAGATATATTGTTACAATGATGAGCACTGGTGTTGTACTTGCTGTCGGGTTTCAGTTATCAGGTGGAGACAGTCAGATGAACACACTGATTTGGTATAGTTGGCTTGGAGGGGTTATTATTGGAACAATGATTGGTGCTAACATGGTATTAGAGGAGCACTGTAGAGCTGGTCCTCGCAATGTCGTTATAACTGGAAGCACAAGAGGATTGGGGAAAGCACTAGCCAGAGAGTTTCTTCTCTCGGGAGACCGGGTGGTTGTGGCTTCTCGCAGCCCTGAGTCTGTTCAAGAAACTCTCAGAGAGCTCGAGGAAAACTTAAAAGGTCTGATGGTTAGAAGTGGTTCTTCCAATACAAGCCTGGCACATGCTAAAGTTGTTGGTACAACATGCAATGTTTGCGACCCTGAAGATGTTCATAATTTAGCAAATTTTGCTTTAAATGAACTTGGTTCCATTGACATTTGGATAAACAACGCGGGCACGAATAAAGGCTTTAGACCCTTACTACAGTTCACGGATGAAGATATTACTCAGATCCTCTCAACAAACCTCGTTGGTTCTCTTCTTTGTACTCGAGAAGCCATGCGTGTAATGAGAGATCAGGCTAAAGGAGGGCACATATTTAACATGGACGGTGCTGGATCTGGAGGTTCAAGTACTCCTTTGACGGCTGTGTATGGATCGACAAAATGTGGTCTTAGACAGCTTCAATCATCTCTTTTGAAAGAGTGCAGGCGGTCCAATGTAGGAGTGCACACTGCATCTCCTGGCATGGTTTTGACAGATCTCCTTCTTAGTGGTTCAACTGTGAGAAACAAACAGATGTTCAATATCATTTGTGAGCTTCCTGAAACAGTGGCTAGAACATTAGTTCCTCGGATGAGGGTTGTTAAAGGAACAGGAAAAGCCATCAACTACTTGACTCCTCCAAGAATCTTATTAGCTCTGGTCACTGCTTGGCTGCGACGAGGTCGGTGGTTTGACGAACAGGGGAAGGCTCTGTATGCAGCCGAGGCAGACAGAATCCGTAACTGGGCCGAAAACCGCACTCGTTTCTCCTTCACCGATGCAATGGAGATGTACACAGAAAACACCTGGGTGTCTGTCTTCTCCCTCTCAGTCACAGCATTCGAAATTCATCGAGATAGCGCCGTTAACGATGCAGCATTGTTAGGTACTGATAGGGGAGAAAAGAAAGGAGAAAGGGACATTCACTCAGCTTTCATCTTTCACTCTGTGTGCGCGGTGGGACTTTGTCAAGTCAAAAGCTTTGACAGTCCACAAATGGCTTCTGTCCTGCTTTCTACATTTGAACAAGCAAAGCAATCACCGTCTCCATCCCACCCTTGGCTGGCAGCCGCGCCTCCGTCTCTCTCACCACCGCCTCCTGATACTCCCTCTCAGACTCCGCCGCCCTCCACCACTCCTTCGCCGCCGCCTCCGAACAGTACCACTCAATCTCCGCCTACTTCTTCTCCTTCACCGCCGGCCGCGCCTTCGAGCTCTCCGCCGCCGCCGCCTACCAACTCGACGGCTCCACCGCAGCTGCCGAGTCCGACGCCGCCGTCGAATTCTGGTACGCCTGTGAATCCCGGAGGAAGTCAGGCTCCGCCCTCGGAAGCGACGCCGTCTCCCTCACCCTCGTCGGGAGTTTCGGCCGGACTTGTGGCTGGGGTCGCCATTGCTGGAGTGGTGGTGGTGGTTGTGGCGTTGATTGTTATGTGTTTGTGTTTAAGAAAGAAGAGAAGGCGCGACGAGGAGGCGTACTACCGGCCGCCGCCGCCGGCGCCACCGGCGGCGTTTAAAGATAGCCCATATGGTCCCCAACAGCACCACTGGCAATCACATCAGCCGCCGCCGGCAGATCATGTCGTGGGGACAGTTCCGAAACCGACTCCTCCGCCAGCAACACGGCCGCCGCCGTCACCTCCGATTATAAACAGCAGCGGAGGCTCTGGATCTAATTATTCAGGGTCTGAAAATTCGTTGGCTCCTGCTCCATCTTCTATTCCCTTGGGCTTTTCTCAAAGCAGTTTCAGTTATGAAGAATTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAATCTCCTTGGACAAGGTGGGTTCGGTTATGTCCATAAAGGAGTTCTTCCAAACGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAACGTGAATTTCAAGCAGAAGTAGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCCTTGGTGGGATATTGCATCACTGGCTCGAACAGATTGCTGGTTTATGAATTTGTTCCCAACAACACATTGGAGTTTCACTTGCACGGGAAAGGACGACCTACCATGGATTGGCCAACGAGACTGAAAATTGCTCTGGGATCTGCCAAGGGATTGGCCTACCTTCATGAGGACTGTAATCCTAAGATCATTCATCGTGACATCAAAGCCGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCTGATTTTGGGCTTGCCAAGTTATCTTCTGATCTTAATACCCATGTTTCAACCCGAGTCATGGGAACTTTCGGATATCTTGCTCCTGAATACGCTTCAAGTGGGAAACTCACTGAGAAATCAGATGTCTTCTCCTTCGGAGTGATGCTTTTGGAGTTGATTACTGGACGAAGACCTGTCGATACAACTCAATCCTTCATGGACGATGGATTGCTCGATTGGGCAAGGCCATTACTACTCCGTGCCACGGAAGATGGAAACTACGACGGTCTAGTAGATCCAGGGCTGCGAGATAACTACGACCACAACGAGATGGCTCGCATGGTTGCTTGCGCCGCCGCCTGTGTGCGTCATTCGGCGAGGCGCCGACCACGGATGAGTCAGGTGGTTCATGCTCTTGAAGGCGAAGCTTCGCTTTCTGATCTCAACGAAGGAATCAGGCCTGGACATAGCACCGTATACAGTTCTTATGGAAGCTCCGACTACGACACGGCTCAGTACAACGAGGACCTGAAAAAGTTCAGGAAGATGGCGTTGGCGAGCCAGGAGTACGGCAGCGAGTACAGCGAGCCGACGAGTGAGTATGGTCTGTACCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGATGAGAACGAAGAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCGTGA 3567 49.93 MSALTKLHVYPQSFDGPSTRDGHLIGALGRGVHRFGVGVSTSRGGLCLRKCRSFRGEDGGDFDKEDGKGRNRGKSRLKEVKVKKESQFWKFLRSGVLGKFNLLLGSDVERGKLVANMEGLFSSAAVQIGRYIVTMMSTGVVLAVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANMVLEEHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSPESVQETLRELEENLKGLMVRSGSSNTSLAHAKVVGTTCNVCDPEDVHNLANFALNELGSIDIWINNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCTREAMRVMRDQAKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQSSLLKECRRSNVGVHTASPGMVLTDLLLSGSTVRNKQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDEQGKALYAAEADRIRNWAENRTRFSFTDAMEMYTENTWVSVFSLSVTAFEIHRDSAVNDAALLGTDRGEKKGERDIHSAFIFHSVCAVGLCQVKSFDSPQMASVLLSTFEQAKQSPSPSHPWLAAAPPSLSPPPPDTPSQTPPPSTTPSPPPPNSTTQSPPTSSPSPPAAPSSSPPPPPTNSTAPPQLPSPTPPSNSGTPVNPGGSQAPPSEATPSPSPSSGVSAGLVAGVAIAGVVVVVVALIVMCLCLRKKRRRDEEAYYRPPPPAPPAAFKDSPYGPQQHHWQSHQPPPADHVVGTVPKPTPPPATRPPPSPPIINSSGGSGSNYSGSENSLAPAPSSIPLGFSQSSFSYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSNRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDLNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTTQSFMDDGLLDWARPLLLRATEDGNYDGLVDPGLRDNYDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSTVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTKKKESGGFNGSS 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7322582 7333086 + Lag0034431.1 Lac3g0903 601325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0903 1188 ProSitePatterns Protein kinases ATP-binding region signature. 826 848 IPR017441 GO:0005524(InterPro)
Lac3g0903 1188 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 188 418 IPR036291 -
Lac3g0903 1188 MobiDBLite consensus disorder prediction 1145 1188 - -
Lac3g0903 1188 MobiDBLite consensus disorder prediction 776 792 - -
Lac3g0903 1188 MobiDBLite consensus disorder prediction 578 655 - -
Lac3g0903 1188 MobiDBLite consensus disorder prediction 1145 1169 - -
Lac3g0903 1188 Pfam Protein tyrosine and serine/threonine kinase 824 1093 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0903 1188 SUPERFAMILY Protein kinase-like (PK-like) 795 1093 IPR011009 -
Lac3g0903 1188 ProSiteProfiles Protein kinase domain profile. 820 1099 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0903 1188 FunFam Proline-rich receptor-like protein kinase PERK1 896 1104 - -
Lac3g0903 1188 Gene3D Phosphorylase Kinase; domain 1 795 895 - -
Lac3g0903 1188 Gene3D Transferase(Phosphotransferase) domain 1 896 1104 - -
Lac3g0903 1188 PRINTS Glucose/ribitol dehydrogenase family signature 279 290 IPR002347 -
Lac3g0903 1188 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Lac3g0903 1188 PRINTS Glucose/ribitol dehydrogenase family signature 376 393 IPR002347 -
Lac3g0903 1188 PRINTS Glucose/ribitol dehydrogenase family signature 355 374 IPR002347 -
Lac3g0903 1188 MobiDBLite consensus disorder prediction 570 680 - -
Lac3g0903 1188 FunFam proline-rich receptor-like protein kinase PERK1 798 895 - -
Lac3g0903 1188 ProSitePatterns Serine/Threonine protein kinases active-site signature. 940 952 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0903 1188 MobiDBLite consensus disorder prediction 713 792 - -
Lac3g0903 1188 FunFam Chlorophyll(Ide) b reductase NOL, chloroplastic 185 439 - -
Lac3g0903 1188 SMART serkin_6 820 1093 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0903 1188 MobiDBLite consensus disorder prediction 753 775 - -
Lac3g0903 1188 Pfam short chain dehydrogenase 189 392 IPR002347 -
Lac3g0903 1188 CDD SDR_c 190 420 - -
Lac3g0903 1188 Gene3D - 186 429 - -
Lac3g0903 1188 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 646 1137 IPR047117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0558 Lac-Chr12:5951816 Lac3g0903 Lac-Chr3:7322582 1.70E-63 dispersed
Lac12g1867 Lac-Chr12:35173864 Lac3g0903 Lac-Chr3:7322582 9.90E-17 dispersed
Lac3g0903 Lac-Chr3:7322582 Lac9g1665 Lac-Chr9:36012322 1.80E-157 dispersed
Lac9g0054 Lac-Chr9:814507 Lac3g0903 Lac-Chr3:7322582 4.90E-67 dispersed
Lac8g2270 Lac-Chr8:40924666 Lac3g0903 Lac-Chr3:7322582 9.00E-54 transposed
Lac11g0648 Lac-Chr11:6615294 Lac3g0903 Lac-Chr3:7322582 1.10E-76 transposed
Lac1g2448 Lac-Chr1:45953211 Lac3g0903 Lac-Chr3:7322582 7.40E-62 wgd
Lac3g0903 Lac-Chr3:7322582 Lac6g2998 Lac-Chr6:47585561 2.60E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86075 PF07714 PK_Tyr_Ser-Thr 9.80E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0903 K13606 - csv:101222986 930.243