Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0915 ATGGATAATTTGCCCCCGCCAAATGCTCAAACTGATAGTGCGGAACCGGGTAACGTGGATTCATCGGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCAGAGCACCCTCATTTTCAGTCTCAGTCTCGGTGTCAATCGGAGTCACCGGCCGTGATGGTGGCGCAGAGTCAGTCGCAGCCAAAGTCCCCTCAGCAGTTGATGGTTTTGCCCATTGGAACACAAGCGCCTCATCCTGTGAGAAAGCCAGATTCTCCGAAATCAAGATCAAGGTCTGTTGAAATAAAAGATGCTACTCCAAAGAAGCAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCATCTGGAATATACTGCGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGCTTCCAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTTCGACCAAAAATTGCTAGTAGTCCACATGGAACACGAGAGAGCAGGGATGAGATTGGAGAGGTTGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTACTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGAAGAGAGACAAGCACTTTTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGCCCAGAGTTATGCTTTGGCCCTACAGGGAAGGATCCCCCCCTCAACGGCATATCGCAATTTCATCAGGCTAATAATATAATGTCTTCTGGCACGTCTACATCATCTCCCCTCCCTGTTGCTCATGTTGGTAGCCCAGCAGCACCGGGGCCTTCAAAGTTTTCATACAGGTCCTTATTAGCAGACCTCATCCAGCCGAACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGTGAAGCTGCCAAGAATTTAGCAGAACAAAAAATTGCTGAGAAGCAGATAAATGATCCACTACAGATTTCCCGTGCTTCATCAACTGGAGATAGGTCACAGCAGCAGAAGGCAGATGAGAAAGCTGCAGCTGGTGAGCATGGAGGTTTAGACCAAAGTGATAGAGTTGTACATGATAATTCTAACTCAGATAGTTCGGAGATGACAAGACCAAGGCCAATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACGAGACACGATGTTCATTGGAGCTGCTCCTGCCGATGGGTTGGCAGGCCAAGGTTGCAGCACATCATCACATGTGCCTGATAAGTCTGTGTCAGAAGTCTACATAGAGCAGGAACGGATCGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGAGAAATAAAAGAAACAAAGTTCACTAGAAGTGAAGTGAGGAATGAAAATCACAGCAACAATTCCACCTCAAGTAGTGGATGCCAACAGAGAACTATTAGCAATGGGGTCGTAAAAAATATCGCTCTCTCGGCACCCAGAATACCGCCCATCGGTGCTGCAGCTCGTCATCCCAGTAAAGATCTGCTACCCAAAATGGTACCCCTTCCTGAAAATGGGAAGAGTAAACCACAAGTTGGCCGCAGAGAAGTATAG 1761 45.83 MDNLPPPNAQTDSAEPGNVDSSDVPAKKLARQLDFTGFGGAVLPEHPHFQSQSRCQSESPAVMVAQSQSQPKSPQQLMVLPIGTQAPHPVRKPDSPKSRSRSVEIKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEASRREAVETTLERNPNAFRPKIASSPHGTRESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVNNMAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPTGKDPPLNGISQFHQANNIMSSGTSTSSPLPVAHVGSPAAPGPSKFSYRSLLADLIQPNDLKELCSVLVVLSSEAAKNLAEQKIAEKQINDPLQISRASSTGDRSQQQKADEKAAAGEHGGLDQSDRVVHDNSNSDSSEMTRPRPMSPGTLALMCDERDTMFIGAAPADGLAGQGCSTSSHVPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTRSEVRNENHSNNSTSSSGCQQRTISNGVVKNIALSAPRIPPIGAAARHPSKDLLPKMVPLPENGKSKPQVGRREV 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7391604 7397741 - Lag0034443.1 Lac3g0915 601337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0915 586 MobiDBLite consensus disorder prediction 40 106 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 1 26 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 513 533 - -
Lac3g0915 586 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 113 148 IPR005172 -
Lac3g0915 586 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 199 233 IPR005172 -
Lac3g0915 586 MobiDBLite consensus disorder prediction 381 440 - -
Lac3g0915 586 PANTHER TESMIN/TSO1-RELATED 45 509 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lac3g0915 586 MobiDBLite consensus disorder prediction 552 586 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 49 80 - -
Lac3g0915 586 SMART CXC_2 196 237 IPR033467 -
Lac3g0915 586 SMART CXC_2 111 151 IPR033467 -
Lac3g0915 586 MobiDBLite consensus disorder prediction 396 423 - -
Lac3g0915 586 ProSiteProfiles CRC domain profile. 112 236 IPR005172 -
Lac3g0915 586 MobiDBLite consensus disorder prediction 310 329 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 1 18 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 517 533 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 92 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0915 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0915 Lac-Chr3:7391604 Lac6g0665 Lac-Chr6:5634333 2.70E-29 dispersed
Lac3g0915 Lac-Chr3:7391604 Lac6g3005 Lac-Chr6:47635815 2.60E-181 wgd
Lac3g0915 Lac-Chr3:7391604 Lac7g0713 Lac-Chr7:5749726 1.50E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0665 . 282 417 CPP Transcription Factor Family AT3G22760 51.7 2.8e-40 164.1
Lac6g0665 . 280 417 CPP Transcription Factor Family AT3G22780 53.1 3.1e-40 164.5
Lac6g0665 . 278 417 CPP Transcription Factor Family AT4G14770 50.3 2.2e-40 164.9
Lac6g3005 . 90 519 CPP Transcription Factor Family AT2G20110 61.6 3.5e-140 496.1
Lac3g0915 . 16 539 CPP Transcription Factor Family AT2G20110 50.5 3.7e-126 449.5
Lac6g3005 . 29 526 CPP Transcription Factor Family AT4G29000 57.7 2.3e-153 540.0
Lac3g0915 . 25 538 CPP Transcription Factor Family AT4G29000 52.9 2.8e-143 506.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23618 PF03638 TCR 3.10E-12 No_clan Lac TF