Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0915 ATGGATAATTTGCCCCCGCCAAATGCTCAAACTGATAGTGCGGAACCGGGTAACGTGGATTCATCGGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCAGAGCACCCTCATTTTCAGTCTCAGTCTCGGTGTCAATCGGAGTCACCGGCCGTGATGGTGGCGCAGAGTCAGTCGCAGCCAAAGTCCCCTCAGCAGTTGATGGTTTTGCCCATTGGAACACAAGCGCCTCATCCTGTGAGAAAGCCAGATTCTCCGAAATCAAGATCAAGGTCTGTTGAAATAAAAGATGCTACTCCAAAGAAGCAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCATCTGGAATATACTGCGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGCTTCCAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTTCGACCAAAAATTGCTAGTAGTCCACATGGAACACGAGAGAGCAGGGATGAGATTGGAGAGGTTGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTACTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGAAGAGAGACAAGCACTTTTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGCCCAGAGTTATGCTTTGGCCCTACAGGGAAGGATCCCCCCCTCAACGGCATATCGCAATTTCATCAGGCTAATAATATAATGTCTTCTGGCACGTCTACATCATCTCCCCTCCCTGTTGCTCATGTTGGTAGCCCAGCAGCACCGGGGCCTTCAAAGTTTTCATACAGGTCCTTATTAGCAGACCTCATCCAGCCGAACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGTGAAGCTGCCAAGAATTTAGCAGAACAAAAAATTGCTGAGAAGCAGATAAATGATCCACTACAGATTTCCCGTGCTTCATCAACTGGAGATAGGTCACAGCAGCAGAAGGCAGATGAGAAAGCTGCAGCTGGTGAGCATGGAGGTTTAGACCAAAGTGATAGAGTTGTACATGATAATTCTAACTCAGATAGTTCGGAGATGACAAGACCAAGGCCAATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACGAGACACGATGTTCATTGGAGCTGCTCCTGCCGATGGGTTGGCAGGCCAAGGTTGCAGCACATCATCACATGTGCCTGATAAGTCTGTGTCAGAAGTCTACATAGAGCAGGAACGGATCGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGAGAAATAAAAGAAACAAAGTTCACTAGAAGTGAAGTGAGGAATGAAAATCACAGCAACAATTCCACCTCAAGTAGTGGATGCCAACAGAGAACTATTAGCAATGGGGTCGTAAAAAATATCGCTCTCTCGGCACCCAGAATACCGCCCATCGGTGCTGCAGCTCGTCATCCCAGTAAAGATCTGCTACCCAAAATGGTACCCCTTCCTGAAAATGGGAAGAGTAAACCACAAGTTGGCCGCAGAGAAGTATAG 1761 45.83 MDNLPPPNAQTDSAEPGNVDSSDVPAKKLARQLDFTGFGGAVLPEHPHFQSQSRCQSESPAVMVAQSQSQPKSPQQLMVLPIGTQAPHPVRKPDSPKSRSRSVEIKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEASRREAVETTLERNPNAFRPKIASSPHGTRESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVNNMAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPTGKDPPLNGISQFHQANNIMSSGTSTSSPLPVAHVGSPAAPGPSKFSYRSLLADLIQPNDLKELCSVLVVLSSEAAKNLAEQKIAEKQINDPLQISRASSTGDRSQQQKADEKAAAGEHGGLDQSDRVVHDNSNSDSSEMTRPRPMSPGTLALMCDERDTMFIGAAPADGLAGQGCSTSSHVPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTRSEVRNENHSNNSTSSSGCQQRTISNGVVKNIALSAPRIPPIGAAARHPSKDLLPKMVPLPENGKSKPQVGRREV 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7391604 7397741 - Lag0034443.1 Lac3g0915 601337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0915 586 MobiDBLite consensus disorder prediction 40 106 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 1 26 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 513 533 - -
Lac3g0915 586 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 113 148 IPR005172 -
Lac3g0915 586 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 199 233 IPR005172 -
Lac3g0915 586 MobiDBLite consensus disorder prediction 381 440 - -
Lac3g0915 586 PANTHER TESMIN/TSO1-RELATED 45 509 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lac3g0915 586 MobiDBLite consensus disorder prediction 552 586 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 49 80 - -
Lac3g0915 586 SMART CXC_2 196 237 IPR033467 -
Lac3g0915 586 SMART CXC_2 111 151 IPR033467 -
Lac3g0915 586 MobiDBLite consensus disorder prediction 396 423 - -
Lac3g0915 586 ProSiteProfiles CRC domain profile. 112 236 IPR005172 -
Lac3g0915 586 MobiDBLite consensus disorder prediction 310 329 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 1 18 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 517 533 - -
Lac3g0915 586 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0915 Lac-Chr3:7391604 Lac6g0665 Lac-Chr6:5634333 2.70E-29 dispersed
Lac3g0915 Lac-Chr3:7391604 Lac6g3005 Lac-Chr6:47635815 2.60E-181 wgd
Lac3g0915 Lac-Chr3:7391604 Lac7g0713 Lac-Chr7:5749726 1.50E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23618 PF03638 TCR 3.10E-12 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0915 - - - 0.0