Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0935 ATGGGTTGCGTTTACTCGAGGGTTTGTATTGGCGAGGCTACCACCCCAAGATCGTCGAGAATAGCCGAAACCAAAAATGCCATAACCGCCACTGAAGTCGACGCGATCTCTTCTTCGTCTTCCAATAGTCGAGAAGGCGAAATCGGCGACCGACTGAATCAACTGAATGCAAACAACAGAGATTCAGAAGTTGGAATCACGAGGCTCTCGAGAGTTTCGTCGCAGTTTTTGCCCGCCGATGGGTCTCGAACCGTCAAAGTTCCTTCTGGAAACTTCGAATTGCGATATTCGTTTCTTTCGCAAAGAGGGTATTATCCCGATGCCCTCGATAAGGCGAATCAAGACAGTTTTTGCATCCACACCCCATTTGGGAACAGCCCAGATGATCATTTCTTTGGGGTTTTCGATGGGCATGGGGAATTCGGAACACAGTGCTCGCAGTTTGCTAAACGAAAGCTCTGTGAAAATTTACTTAGGAATAGTAGATTCCACAGTGACGCAGTGGAGGCTTGCCACGCGGCCTATTTGACGACTAATTCACAGTTACACGCAGATATCTTGGATGATAGTATGAGTGGTACTACTGCCATTACTGTTTTAGTTAGAGGTAGGACTATATATGTTTCTAATTCCGGTGATTCAAGAGCGGTTCTAGCAGAGCAGAGAGGGAAGGAAGTTGTGGCTGTCGACCTCTCAATCGATCAAACTCCATTTCGGACTGATGAACTCGAACGTGTTAAGCTTTGTGGTGCCAGAGTTCTTACACTTGATCAGATTGAGGGGCTGAAGAACCCTGATGTTCAGTGCTGGGGTACTGAAGAAGGAGATGATGGTGATCCTCCTAGGCTCTGGGTGCCTAATGGGATGTACCCTGGCACTGCTTTTACAAGAAGTATAGGTGACTCAATTGCTGAGACTATTGGAGTTGTTGCTACGCCTGAAATTGTTGTCGTGGAGCTCACACCAGATCATCCTTTCTTTGTTGTTGCTAGTGATGGGGTTTTCGAGTTTCTTTCGAGCCAAACCGTGGTCGACATGGTTTCTAAATATAAAGATCCCCGTGATGCTTGTGCTGCGATTGTGGCTGAGTCTTACAGACTTTGGCTTCAATTTGAGACTCGAACAGATGATATCACTGTTATCGTGGTGCATATTAATGGGCTAACCAATACGGTTACTAGTGAATCAATGAGATCTGATGGAGGTGGTTTTGTTCGATCTGCTATTCCTCAAGTCGTGGAGGTGACGGGATCAGAGTCTCCTTCTACCTTTGGCTGGAATAGAAACAATCGTGCAAGGCAAGATTTGTCGAGGGCACGGCTCCGGGCTATCGAAAATTCCCTAGAGAATGGGCAAGTCTGGGTGCCTCCATCTCCAGCTCACAGGAAAACATGGGAAGAAGAAGCACATATTGAACGAGCATTGCATGACCATTTCCTCTTCAGAAAACTAACCGATTCTCAGTGCCAAGTTTTATTAGATTGCATGCAAAGAGTTGAGGTCATACCGGGGCAAATTGTAGTTGAACAAGGTGGCGAAGGTGACTGTTTCTATGTGGTTGGCAGTGGAGAATTTGAGGTCTTGGCAACCCAGGAAGAAAGCCATGGAGAGGTTCCTCGAATTCTGCAACACTACACCGCTGAGAAGCTATCTTCCTTCGGCGAACTGGCTCTGATGTATAACAAACCACTTCAAGCCTCAGTACGTGCTGTAACGAGTGGGACACTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGAATTCTTATATCAGAATTTTCTAACCTGTCATCTTTGAAATTGCTTCGATCCGTGGACCTTCTGTCAAAGTTGACAATCTTGCAATTGAGTCACATTGCAGATTGCCTTTCTGAAGTTACCTTCTCAGATGGGCAGCTGATAGTTGATGGGACCGAAGGTTTATGTGCACTGCACATTATTCAGAAGGGACAGGTGAGGATTACTTTTGATGCGGAGTTAATGAGCAGTTCAAACGTTTACAGCTTCAATTATGCCAGTCAAAAAGAGGATGATGCTGCACAGAGTGGTAATGAGATCTCAGTTATTAAGAAAGAGGGAAGTTATTTTGGTGAATGGGCACTACTTGGTGAGCGTATCGGCTTCTTACGTGCCGTTGCTGTGGGAGATGTTGTGTGTGCTATTTTAACAAAGGAAAAGTTTGAGTCAGTTGTTGGCCCTTTACCAAAGCTCTCTCAAAATGATCAAAAGGCAAAGGAACATTCTTCAGACTCCCTCCATAAGGATATTTCGGCTCTTTCAAAAGTTGAGCTTGCTGATCTGGAGTGGAAAACATGTTTGTATTCCACGGAATACAGTGAGATCGGGCTAGTTCGGTTAAGGAACACAGAAACTATGCTTAGTTTGAAAAAGTTTACAAGACAGAAGGTCAAAAGGCTGGGACTTGAAGCACAAGTTTTGAAGGAGAAAAATCTTATGAAGAGCATCAGTCCTTCAGCTTGTGTGCCGCAACTTCTCTGCACTTGTTTAGATCAATCACATGCTGGCATATTGCTGAAAACATGCCTTGCTTGTCCTTTCTCTTCGATACTTCATGTCCCACTCGATGAATCTTCGGCACGTTTCTATGCAGCCTCTCTTGTTGTAGCACTGGAAGATTTGCACAAGCTTGGTGTTCTCTACAGAGGAATCTCCCCTGATGTTCTAATGTTGGATCAAACTGGACGCATACAGTTAGTAGACTTCAGATTTGGGAAAAGAATATCGGGTGAGAGAACCTATACCATTTGCGGGATGGCGGACTTTTTAGCACCTGAGATAGTTCAGGGCAATGGTCATGGTTTTGCTGCTGACTGGTGGGCGCTGGGAGTCTTAATCTATTTCATGCTGAAGGGTGAAATGCCATTTGGGTCGTGGCGACAAAGCGAGCTCGATACATTTTCAAAGATTGCAAAAGGACAACTAAGCCTTCCCCAGATTTTCAGTCCTGAAGCCATTGATCTCATCGTCAAGTTACTTGAAGTTGATGAGAAGAAAAGACTCGGTAACGAGAACCAAAACTCTGTTAGAAGCCATCCCTGGTTTGATGGCGTTGATTGGAACGGGATCCATGACGGTACCTTTCCCGTTCCCAACACAATCACTTCTCGTGTGGCTCAATATTTGGATAGCTACCCTGAAGATTGCAGTGTTTCTTTAGTTAAACCACCTCAAGATCCCAAAGAACAGGAGGCCCCCGAGTGGATCAACGACTGGTAG 3234 45.3 MGCVYSRVCIGEATTPRSSRIAETKNAITATEVDAISSSSSNSREGEIGDRLNQLNANNRDSEVGITRLSRVSSQFLPADGSRTVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGNSPDDHFFGVFDGHGEFGTQCSQFAKRKLCENLLRNSRFHSDAVEACHAAYLTTNSQLHADILDDSMSGTTAITVLVRGRTIYVSNSGDSRAVLAEQRGKEVVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIVVVELTPDHPFFVVASDGVFEFLSSQTVVDMVSKYKDPRDACAAIVAESYRLWLQFETRTDDITVIVVHINGLTNTVTSESMRSDGGGFVRSAIPQVVEVTGSESPSTFGWNRNNRARQDLSRARLRAIENSLENGQVWVPPSPAHRKTWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVEVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGEVPRILQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKLLRSVDLLSKLTILQLSHIADCLSEVTFSDGQLIVDGTEGLCALHIIQKGQVRITFDAELMSSSNVYSFNYASQKEDDAAQSGNEISVIKKEGSYFGEWALLGERIGFLRAVAVGDVVCAILTKEKFESVVGPLPKLSQNDQKAKEHSSDSLHKDISALSKVELADLEWKTCLYSTEYSEIGLVRLRNTETMLSLKKFTRQKVKRLGLEAQVLKEKNLMKSISPSACVPQLLCTCLDQSHAGILLKTCLACPFSSILHVPLDESSARFYAASLVVALEDLHKLGVLYRGISPDVLMLDQTGRIQLVDFRFGKRISGERTYTICGMADFLAPEIVQGNGHGFAADWWALGVLIYFMLKGEMPFGSWRQSELDTFSKIAKGQLSLPQIFSPEAIDLIVKLLEVDEKKRLGNENQNSVRSHPWFDGVDWNGIHDGTFPVPNTITSRVAQYLDSYPEDCSVSLVKPPQDPKEQEAPEWINDW 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7555462 7560432 + Lag0034463.1 Lac3g0935 601357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0935 1077 SUPERFAMILY Protein kinase-like (PK-like) 762 1054 IPR011009 -
Lac3g0935 1077 SMART serkin_6 773 1020 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0935 1077 CDD CAP_ED 606 738 IPR000595 -
Lac3g0935 1077 Gene3D Transferase(Phosphotransferase) domain 1 851 1036 - -
Lac3g0935 1077 Pfam Protein kinase domain 777 1020 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0935 1077 Gene3D Jelly Rolls 449 588 IPR014710 -
Lac3g0935 1077 Gene3D Jelly Rolls 593 751 IPR014710 -
Lac3g0935 1077 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 90 387 - -
Lac3g0935 1077 ProSitePatterns PPM-type phosphatase domain signature. 131 139 IPR000222 GO:0043169(InterPro)
Lac3g0935 1077 Gene3D Phosphorylase Kinase; domain 1 765 850 - -
Lac3g0935 1077 CDD CAP_ED 480 588 IPR000595 -
Lac3g0935 1077 Pfam Protein phosphatase 2C 123 363 IPR001932 -
Lac3g0935 1077 Gene3D - 89 386 IPR036457 -
Lac3g0935 1077 Pfam Cyclic nucleotide-binding domain 500 588 IPR000595 -
Lac3g0935 1077 ProSiteProfiles Protein kinase domain profile. 766 1020 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0935 1077 ProSiteProfiles PPM-type phosphatase domain profile. 95 385 IPR001932 -
Lac3g0935 1077 SUPERFAMILY cAMP-binding domain-like 460 589 IPR018490 -
Lac3g0935 1077 CDD PP2Cc 111 385 IPR001932 -
Lac3g0935 1077 PRINTS cAMP-dependent protein kinase signature 501 515 - -
Lac3g0935 1077 PRINTS cAMP-dependent protein kinase signature 551 560 - -
Lac3g0935 1077 PRINTS cAMP-dependent protein kinase signature 516 530 - -
Lac3g0935 1077 PRINTS cAMP-dependent protein kinase signature 726 738 - -
Lac3g0935 1077 SMART cnmp_10 480 603 IPR000595 -
Lac3g0935 1077 SMART cnmp_10 606 745 IPR000595 -
Lac3g0935 1077 SUPERFAMILY cAMP-binding domain-like 599 739 IPR018490 -
Lac3g0935 1077 SUPERFAMILY PP2C-like 83 387 IPR036457 -
Lac3g0935 1077 ProSiteProfiles cAMP/cGMP binding motif profile. 480 588 IPR000595 -
Lac3g0935 1077 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 454 594 - -
Lac3g0935 1077 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 352 1077 - GO:0004691(PANTHER)|GO:0005952(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Lac3g0935 1077 ProSiteProfiles cAMP/cGMP binding motif profile. 606 732 IPR000595 -
Lac3g0935 1077 SMART PP2C_4 91 383 IPR001932 -
Lac3g0935 1077 MobiDBLite consensus disorder prediction 1058 1077 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0935 Lac-Chr3:7555462 Lac7g0812 Lac-Chr7:6494413 1.40E-116 dispersed
Lac3g0935 Lac-Chr3:7555462 Lac12g2352 Lac-Chr12:40678509 2.80E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86076 PF00069 Pkinase 2.60E-35 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0935 - - - 0.0