Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0936 ATGATCCGGTTAAGTTTGTTTACTGTTTGCCTCTTTTCTGTGTTCTTTTGTGTTGAAGCTCAAGTTGCTTCTCAAGATGCTGAAAACAGTGCTTTTCAGCCAAGCCTTGGCTTTGTGATAGGGATTCTGGGAGTTATGTTTTTGTTGACATTTATTCTCCTTGTCTATGCAAAGTTCTGCCATAGGAGATCTTCTATTCGAGGGGATAATGTAAACCATCTGGGACAAATCAGATCAAGCTCTCGGTTTTCCGGAATTGATAAGACGGTGATCGAGTCCCTTCCATTCTTTAGATTCTCCACCCTCAAAGGGTCCAAAGAAGGGCTGGAGTGTGCTGTCTGTCTATCGAAATTCGAAGATATCGAAATTCTCCGGTTGTTGCCAAAGTGCAAGCACGCGTTTCATATCAACTGCATCGACCATTGGCTCGAAAAACATGCTAGCTGTCCTCTTTGCAGGCAAAGAGTTTGCTCTGAGGACTTGAAGCTCCTTACTGGCTCAAGCAGCATGAGGTTCTTATGGAGCAACCTTTCAGAGCTGAAACAAGACTCAAACATAGAGCTCTTTGTACAGAGAGAAGAAGAAGAACAAGAACAACTCCATGGCTCATCTAGATTCAGCATTGGAAGAAGCTTCAGAAAGATCTTAAAGAGTGATAAAGAAGGGGAAATGTTGATACAAAAGGCCTGTGATGGAGATGAGAACATGAAGAACTTACACAGACACAATCACAAGATTATCTTATCAGATTTCGTCTTCATGAATCGATGGAGTAACGTCAGCTCCTCAGACCTGATGTTCTTGAACAAAGAGATGGTTGGTTCCATTTCAAGCAGTAGATTCACTTCCTTGGAAACAGACATTGAGCAGTCAACGCTGTCAAGATCAGTGCAAAACGAAGAAATCTTGAAGATCAAAGAGGAGATGGACATAAAGAGATCATTTGAGAGCAAACTCAGCACAATAAGCCAAAGTAACTCAGTTCCAATTCTGGAATTTCCTTCCACATCAGAATCTGCTGCAAATCCATGTCAAACAGCAAGAATTACAAGCACAGAAGCGAGAAGATCAGTTTCAGAAATCACAGGCATATCAAGATTTGGAGGTGATCTGCATATGAAGTTCAACAGAAAAGTTGAAATTGGGGAATCTTCTGATCTGGGAAACAATGTCAAGCAAGAAAGAATGAGACAAATCTGGTACCCAATTGCCAAAAGAACAGTCCAATGGTTTGCCAACAGAGAAACAAGGTTTCAACCAGCTGAGAATAGACAGCAGACAGTAGAAACTGTATAG 1296 41.44 MIRLSLFTVCLFSVFFCVEAQVASQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRSSIRGDNVNHLGQIRSSSRFSGIDKTVIESLPFFRFSTLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHASCPLCRQRVCSEDLKLLTGSSSMRFLWSNLSELKQDSNIELFVQREEEEQEQLHGSSRFSIGRSFRKILKSDKEGEMLIQKACDGDENMKNLHRHNHKIILSDFVFMNRWSNVSSSDLMFLNKEMVGSISSSRFTSLETDIEQSTLSRSVQNEEILKIKEEMDIKRSFESKLSTISQSNSVPILEFPSTSESAANPCQTARITSTEARRSVSEITGISRFGGDLHMKFNRKVEIGESSDLGNNVKQERMRQIWYPIAKRTVQWFANRETRFQPAENRQQTVETV 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7566744 7568039 - Lag0034464.1 Lac3g0936 601358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0936 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Lac3g0936 431 FunFam RING-H2 finger protein ATL43 86 160 - -
Lac3g0936 431 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lac3g0936 431 SMART ring_2 111 152 IPR001841 -
Lac3g0936 431 CDD RING-H2_EL5-like 110 153 - -
Lac3g0936 431 SUPERFAMILY RING/U-box 90 157 - -
Lac3g0936 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 415 - -
Lac3g0936 431 Pfam Ring finger domain 110 153 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0375 Lac-Chr3:2815827 Lac3g0936 Lac-Chr3:7566744 1.60E-41 dispersed
Lac3g0936 Lac-Chr3:7566744 Lac6g0930 Lac-Chr6:8245958 6.30E-20 dispersed
Lac3g0936 Lac-Chr3:7566744 Lac3g0937 Lac-Chr3:7568939 1.70E-105 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0936 K10664 - csv:105436309 490.345