Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0945 ATGGCTCAGCTTATTGAGAATGAGCCTAGAATTATAAACTCATCGCCGTCGTCGCCGTCGCCGTCGTCGTCGTCGTCGTCGTCGGTCGAGTCGAACCGGAAACGGGCGAAGCGGCCCAGGGAAAACGGCAACAGCAACAGCAAGCACCCGGTTTTCCGTGGGGTCCGAATGAGGGCATGGGGCAAATGGGTGTCCGAAATTCGTGAGCCCCGAAAGAAGAGTCGGATCTGGCTCGGCACTTTCTCTACTCCTGAAATGGCCGCACGTGCCCACGACGTGGCTGCTCTCACCATCAAAGGCAACTCCGCCATTCTCAACTTCCCCGAACTCGCCGATCAATTCCCCCGCCCGGCTTCCAACTCGCCTCGCGACGTTCAGGCCGCCGCCGCCAAAGCCGCCTCCATGGAAATCCCCACCACCCCTTCTCCATCCTCCTCCTCCTCCTCCTCCTCTTTATGCCCGTCGACGCCGGAGGAATTGAGTGAAATCGTGGAGCTCCCGAGTTTAGGGACGAGTTACGAAACGGCCGAGTTGGGGAGCGAGTTCGTATTCGTTGACTCGGTGGAGGGTTGGCTTTATTCTTACCCATGGTATCACAGAGTGGATAATGTGGATCAAGAAGAAGATTACGGCTTCTTCAGAGACCAGATTTCAATGGCGGATTATACAGAGACCTTCGAAGCTTTCTTGTGGCAACCTTAA 702 56.13 MAQLIENEPRIINSSPSSPSPSSSSSSSVESNRKRAKRPRENGNSNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEIPTTPSPSSSSSSSSLCPSTPEELSEIVELPSLGTSYETAELGSEFVFVDSVEGWLYSYPWYHRVDNVDQEEDYGFFRDQISMADYTETFEAFLWQP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7626221 7626922 + Lag0034473.1 Lac3g0945 601367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0945 233 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677(InterPro)
Lac3g0945 233 MobiDBLite consensus disorder prediction 8 30 - -
Lac3g0945 233 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0945 233 SMART rav1_2 51 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0945 233 MobiDBLite consensus disorder prediction 115 155 - -
Lac3g0945 233 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0945 233 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0945 233 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0945 233 MobiDBLite consensus disorder prediction 1 52 - -
Lac3g0945 233 Pfam AP2 domain 50 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0945 233 MobiDBLite consensus disorder prediction 137 155 - -
Lac3g0945 233 FunFam Ethylene-responsive transcription factor 2 50 109 - -
Lac3g0945 233 CDD AP2 52 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0945 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 185 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0847 Lac-Chr2:6702233 Lac3g0945 Lac-Chr3:7626221 2.80E-48 dispersed
Lac3g0945 Lac-Chr3:7626221 Lac6g1292 Lac-Chr6:12963221 1.30E-35 dispersed
Lac5g0379 Lac-Chr5:3982460 Lac3g0945 Lac-Chr3:7626221 4.10E-34 transposed
Lac11g0766 Lac-Chr11:8045501 Lac3g0945 Lac-Chr3:7626221 8.20E-36 wgd
Lac3g0945 Lac-Chr3:7626221 Lac4g2907 Lac-Chr4:47475878 1.60E-41 wgd
Lac3g0945 Lac-Chr3:7626221 Lac6g3016 Lac-Chr6:47767594 6.40E-59 wgd
Lac3g0945 Lac-Chr3:7626221 Lac6g1089 Lac-Chr6:10126801 7.10E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23620 PF00847 AP2 1.90E-13 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0945 K09286 - csv:101219745 327.405