Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0954 | ATGCATGAAGTGGTAGCGGAAGAGTGGGGAAGGGAAGGAATCAACGGCCTTGAATGGCAGAAGAGGTGGGAAGTTGTGTTCTCTAATGGCTTCCAGAGGACTGATAATGAGGTCGTGTCAGAGGCGGTTGCAACCGACATGGTTGGATCCACGGCGGTTGTAGTCGTTCTATCTGGCTGCCAGATTATTGTATCCAATTGCGGTGACTCTCGGGCGGTTCTTTGCCAGCGGAATAAAGCGATTCCATTGACAGTCGATCAAAAGCCTGATAGACAGGACGAACTCATGAGAATTGAAAGAGATGGAGGCAAAGTCATTAACTGGATGGGTGCTAGAGTGCTTGGAGTTCTTGCCATGTCAAGAGCCATAGGGGACCGATATCTTCGGCCGTGGATAATTCCCGTGCCGGAAATTAGTTTCACAACAAGGAGTGATGAGGATGAATGTGTAGTTCTGGCAAGCGACGGGCTTTGGGACGTAATGACGAATGAAGAGGTTGGGCAGGTGGCTTGCCATCTTCTTAGGCGCCTCCGCAGGTCATCGACAACTGATGACACGGCTCCGGCACAGATTGTGGCTAATAATCTCACTGAAATAGCATATGGAAGGAACAGTTCCGATAACATTTCTGTTATTGTCATCGATCTGAAAGCAAGGAAAGCAAACCCACAGAGGCAATGA | 681 | 49.05 | MHEVVAEEWGREGINGLEWQKRWEVVFSNGFQRTDNEVVSEAVATDMVGSTAVVVVLSGCQIIVSNCGDSRAVLCQRNKAIPLTVDQKPDRQDELMRIERDGGKVINWMGARVLGVLAMSRAIGDRYLRPWIIPVPEISFTTRSDEDECVVLASDGLWDVMTNEEVGQVACHLLRRLRRSSTTDDTAPAQIVANNLTEIAYGRNSSDNISVIVIDLKARKANPQRQ | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 7745947 | 7747162 | + | Lag0034482.1 | Lac3g0954 | 601376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0954 | 226 | SMART | PP2C_4 | 3 | 214 | IPR001932 | - | |
| Lac3g0954 | 226 | CDD | PP2Cc | 1 | 216 | IPR001932 | - | |
| Lac3g0954 | 226 | FunFam | Protein phosphatase 2C 50 | 7 | 223 | - | - | |
| Lac3g0954 | 226 | PANTHER | PROTEIN PHOSPHATASE | 1 | 215 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Lac3g0954 | 226 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 216 | IPR001932 | - | |
| Lac3g0954 | 226 | Gene3D | - | 1 | 225 | IPR036457 | - | |
| Lac3g0954 | 226 | Pfam | Protein phosphatase 2C | 24 | 209 | IPR001932 | - | |
| Lac3g0954 | 226 | SUPERFAMILY | PP2C-like | 2 | 217 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g0954 | Lac-Chr3:7745947 | Lac6g0172 | Lac-Chr6:1385544 | 4.00E-50 | dispersed | |
| Lac12g2155 | Lac-Chr12:38649300 | Lac3g0954 | Lac-Chr3:7745947 | 8.60E-07 | transposed | |
| Lac3g0954 | Lac-Chr3:7745947 | Lac4g2925 | Lac-Chr4:47603543 | 3.00E-53 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g0954 | K14497 | - | csv:101220173 | 423.705 |