Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0960 ATGACGTCGTCTCTTTCTTCTCTTCTCCTTTTTCTGGAAACCATTTCCTTCTTCCTCCTCCTCCTCTGTTCCCACCATGTCAATTCCCAGCTCTACCAACAAGAACACTCTGTTCTTCTCCGACTCAACCACTTCTGGCAAAACCAAGCACCGATCACCCATTGGCGCTCCTCAAATGATTCCCATTGTACGTGGCCGGAGATTCAGTGCACCAACAACTCTGTCACTGCTCTGCTTTTCCAAGACTACAATTTGAACGGAACCTTCCCCCCTTTCATTTGCGATCTCAAGAATCTCACCCGCCTTGATCTTCACAGCAATTACATCGCCGGTGGCTTTCCGACCGCTCTTTACAATTGTTCGAGGCTTAATCACCTCGACCTCACGGGGAATTACTTCGTCGGCCCGATTCCCGATGATGTTGATCGACTGTCTCGCCTCCAGTTTCTCTATCTCGGCAACAACGGCTTCTCCGGCGATATTCCGGCATCCATTTCTCGGTTGTCGGAACTCCGGTTCCTTCACCTTTATCAGAATCGATTCAATGGGACTTACCCATCTGAAATCGGCAACTTGTCGAATCTGGAAGAATTGCTGATGGCTTATAATTCAAATCTGCTACCGGCAGCCTTGCCTTCCAGTTTCGCCCAATTGAAGAAATTGAAGTATATATGGATGACAGACACGAAACTAATCGGTGAAGTTCCGGATTGGATCGGAAATTTGACAGCCCTCGAGCATTTGGATTTGTCGAGGAACAATCTGACTGGGAAAATCCCTAGCAGTTTGTTTACGTTGGAGAATCTTACTTACTTGTACCTGTTCAATAACATTCTATCAGGAGAAATTCCTCAGCGGATTGAATCTAAAAAGATCAAGGAATACGACCTATCGGAGAATAATTTGACCGGAGAAATTCCGGCGGCTATCGGCAATCTTCAGCAATTGACGGCTCTAGGTCTCTCTTCAAATCGATTATATGGAGAAATCCCAGAAAGCATGGGACGTCTTCCATTGTTAACAGACGTCAAATTGTTCAACAACAATTTAAATGGCACATTGCCGCCAGATTTTGGTCGGAATCTGATTCTCGAAAAATTTGAGGTGAACGAAAATAAGCTCATCGGAAGCTTGCCGGAGCATTTATGCTCCGGCAGTAAGCTCATAGGATTGACTGCTTTCGAGAATAATCTTAGTGGGGAATTGCCAGAATCGCTCGGGAATTGCAGTACCTTGATGATTATTGATGTTCATACGAATAACTTTTCTGGAAAAGTTCCTGCCGGTCTGTGGACGTATCCAAATTTGACTTATGTAGTGATGAGCGACAATTCTTTCACGGGTGAATTCCCTGAGAGAGTCTCGAAGAATCTTCAGAGATTGGAAATCAGCAACAACAAATTTTCAGGGAAAATTTCATCTGGGTTATCTTCATTGTGGGATTTGACTGAGTTTGAAGCAAGCAATAATTTGTTGACAGGACAAATCCCTGAAGAACTCACTGCTCTTTCAAAGTTGAACAAGCTTTTCCTTGATGGAAATCAACTCACCGGAGAGCTTCCACGGAATATCATTTCGTGGAGATCACTGAACAATCTTAACCTCAGTCGAAATCGTCTTTCCGGTGAAATTCCCGACCAACTTGGTGGTTTACCAAGCCTTACTGATCTTGATCTCTCGGAGAATCGACTTTCTGGGACGATTCCAACTCAACTAGGAAATTTGGAGCTGAATTTCCTCAACCTCTCTTCGAATTTTCTGTCTGGGACAATTCCATTTGCGTTAGAAAACGCAATCTATGCAAGAAGCTTTTTGAACAATCCGAGTCTTTGTTCAAACAACGCAATTCTAAAAATGGACGGCTGCAGTTTGAGAACTCAAAATTCGAGAAAGATTTCATCACAACATCTTGCTCTGATCGTAAGCTTGGGAATAATATTATCCATACTCTTTGTACTCTCTGCTCTGTACATAATCAAAATCTATAAGAAGACTGGAAATAGAGAAGATATCGAATGGAAACTGACCTCATTTCAGAGGCTGAATTTCTCAGAGACAAATCTTTTATCTGGACTATCAGAAAACAACGTGATCGGAAGCGGTGGATCTGGGAAAGTTTACCGAATACCAGTGAATAATTTGGGCGATATAGTGGCCGTGAAGAGGATATGGAACAACAAAAAGTCAGATCACAAGCTGGAGAAAGAATTCATGGCGGAAGTAAAGATTCTCAGTTCAATTCGACATAACAACATAATCAAACTCCTCTGCTGCGTTTCTTGTGAAACGTCACGCCTTCTCGTTTATGAGTATATGGAGAGGCAAAGCCTTGACAAATGGCTGCACAAGAGGAACTCGCCGCCGAGAATTACAGGGTCGGACTCTGTTTTCGGTGTCGCCCTTGATTGGCCAACGAGATTTCAAATTGCAGTGGGGGCGGCACAGGGCCTCTGTTACATGCACCATGAATGTTCACCTCCGGTAATTCACAGAGACTTGAAGTCCAGCAATATTTTACTAGATTCGGAATTCAATGCCAAAATAGCAGATTTTGGCTTGGCCAAGTTGCTGGTAAAGCAAGGGGAACCAGCTTCAGTCTCCGCCGTCGCGGGCTCCTTCGGATACATAGCTCCAGAGTATGCTCAAACACCAAGAATTAACGAGAAGATCGACGTGTTTAGTTATGGGGTTATTCTTCTGGAGTTGGTGACCGGAAAGGAAGCTCTCGAGGGCGATGAAGAGTCGTCTCTGGCCGAGTGGGCATGGGAGTACATTCAACAGGGCAAGCCAATAGCTGATGCGTTGGATGAGGATGTGAATGAGCCACATTATGTTGATGAAATGTGCAGTGTTTTCAAACTTGGAGTGATTTGCACTTCCAGTTCGCCGACCAGCCGGCCAACCATGAACCAGGCTCTGGAAATCTTGATCCGCAGTCGGACCTCAACACTCCAAAACTATGGAGATAAAAAACCCAGATTGTGA 2985 44.42 MTSSLSSLLLFLETISFFLLLLCSHHVNSQLYQQEHSVLLRLNHFWQNQAPITHWRSSNDSHCTWPEIQCTNNSVTALLFQDYNLNGTFPPFICDLKNLTRLDLHSNYIAGGFPTALYNCSRLNHLDLTGNYFVGPIPDDVDRLSRLQFLYLGNNGFSGDIPASISRLSELRFLHLYQNRFNGTYPSEIGNLSNLEELLMAYNSNLLPAALPSSFAQLKKLKYIWMTDTKLIGEVPDWIGNLTALEHLDLSRNNLTGKIPSSLFTLENLTYLYLFNNILSGEIPQRIESKKIKEYDLSENNLTGEIPAAIGNLQQLTALGLSSNRLYGEIPESMGRLPLLTDVKLFNNNLNGTLPPDFGRNLILEKFEVNENKLIGSLPEHLCSGSKLIGLTAFENNLSGELPESLGNCSTLMIIDVHTNNFSGKVPAGLWTYPNLTYVVMSDNSFTGEFPERVSKNLQRLEISNNKFSGKISSGLSSLWDLTEFEASNNLLTGQIPEELTALSKLNKLFLDGNQLTGELPRNIISWRSLNNLNLSRNRLSGEIPDQLGGLPSLTDLDLSENRLSGTIPTQLGNLELNFLNLSSNFLSGTIPFALENAIYARSFLNNPSLCSNNAILKMDGCSLRTQNSRKISSQHLALIVSLGIILSILFVLSALYIIKIYKKTGNREDIEWKLTSFQRLNFSETNLLSGLSENNVIGSGGSGKVYRIPVNNLGDIVAVKRIWNNKKSDHKLEKEFMAEVKILSSIRHNNIIKLLCCVSCETSRLLVYEYMERQSLDKWLHKRNSPPRITGSDSVFGVALDWPTRFQIAVGAAQGLCYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKLLVKQGEPASVSAVAGSFGYIAPEYAQTPRINEKIDVFSYGVILLELVTGKEALEGDEESSLAEWAWEYIQQGKPIADALDEDVNEPHYVDEMCSVFKLGVICTSSSPTSRPTMNQALEILIRSRTSTLQNYGDKKPRL 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7793474 7796549 + Lag0034488.1 Lac3g0960 601382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0960 994 FunFam Receptor-like protein kinase HSL1 isoform A 32 183 - -
Lac3g0960 994 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 188 288 - -
Lac3g0960 994 SUPERFAMILY L domain-like 50 375 - -
Lac3g0960 994 Gene3D Ribonuclease Inhibitor 291 455 IPR032675 -
Lac3g0960 994 Gene3D Ribonuclease Inhibitor 456 699 IPR032675 -
Lac3g0960 994 PRINTS Leucine-rich repeat signature 551 564 - -
Lac3g0960 994 PRINTS Leucine-rich repeat signature 245 258 - -
Lac3g0960 994 FunFam Receptor-like protein kinase HSL1 672 771 - -
Lac3g0960 994 Gene3D Transferase(Phosphotransferase) domain 1 773 991 - -
Lac3g0960 994 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 203 308 - -
Lac3g0960 994 SUPERFAMILY Protein kinase-like (PK-like) 684 976 IPR011009 -
Lac3g0960 994 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524(InterPro)
Lac3g0960 994 Pfam Leucine rich repeat 98 156 IPR001611 GO:0005515(InterPro)
Lac3g0960 994 Pfam Leucine rich repeat 528 585 IPR001611 GO:0005515(InterPro)
Lac3g0960 994 Pfam Leucine rich repeat 236 277 IPR001611 GO:0005515(InterPro)
Lac3g0960 994 Gene3D Ribonuclease Inhibitor 184 290 IPR032675 -
Lac3g0960 994 Gene3D Ribonuclease Inhibitor 32 183 IPR032675 -
Lac3g0960 994 Gene3D Phosphorylase Kinase; domain 1 700 772 - -
Lac3g0960 994 Pfam Leucine Rich Repeat 296 313 IPR001611 GO:0005515(InterPro)
Lac3g0960 994 Pfam Leucine Rich Repeat 171 192 IPR001611 GO:0005515(InterPro)
Lac3g0960 994 Pfam Leucine Rich Repeat 457 479 IPR001611 GO:0005515(InterPro)
Lac3g0960 994 FunFam Kinase family with leucine-rich repeat domain-containing protein 772 992 - -
Lac3g0960 994 SMART serkin_6 692 994 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0960 994 SMART LRR_typ_2 503 527 IPR003591 -
Lac3g0960 994 SMART LRR_typ_2 242 266 IPR003591 -
Lac3g0960 994 SMART LRR_typ_2 96 120 IPR003591 -
Lac3g0960 994 SMART LRR_typ_2 313 337 IPR003591 -
Lac3g0960 994 SMART LRR_typ_2 144 168 IPR003591 -
Lac3g0960 994 SMART LRR_typ_2 551 575 IPR003591 -
Lac3g0960 994 Pfam Protein kinase domain 694 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0960 994 ProSiteProfiles Protein kinase domain profile. 692 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0960 994 SUPERFAMILY RNI-like 292 634 - -
Lac3g0960 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0960 994 FunFam Leucine-rich repeat receptor-like protein kinase TDR 310 624 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0960 Lac-Chr3:7793474 Lac5g1862 Lac-Chr5:36897272 3.50E-66 dispersed
Lac3g0960 Lac-Chr3:7793474 Lac3g0961 Lac-Chr3:7803298 3.40E-234 tandem
Lac3g0960 Lac-Chr3:7793474 Lac6g1064 Lac-Chr6:9754287 8.00E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86077 PF00069 Pkinase 1.60E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0960 - - - 0.0