Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0961 | ATGATGTTGACTCTTTCTTCTCTTCTCCTTTTTCTGGAAACCATTTCCTTCTTCCTCCTCCTCCTCTGTTCCCACCATGTCAATTCCCAGCTCTACCAACAAGAACACTCTGTTCTTCTCCGACTCAACCACTTCTGGCAAAACCAAGCACCGATCACCCATTGGCGCTCCTCAAATGATTCCCACTGTACGTGGCCAGAGATTCAGTGCACCAACAACTCTGTCACTGCTCTGCTTTTCCAAAACTACAATTTGAACGGAACTTTCCCCCCTTTCATTTGCGATCTCAAGAATCTCACCTACCTTGATCTCCAGCTCAATTTCATCTCCGGCGGTTTTCCGACAACGCTTTACAATTGCTCGAAGCTTAATTACCTCGACCTCTCGCAGAATTACTTCGTTGGCCCGATTCCCGATGACGTTGACCGCTTGTCCCGCCTCCAGTTTCTTAACCTCGGCGGCAACAGCTTCTCCGGCGAGATTCCAGCATCCATTTCTCGGTTGTCGGAACTCCGGTCCCTTTACCTTTTTGTGAATCAGTTCAATGGGACTTACCCATCTGAAATAGGTAACTTGTCGAATCTGGAAGAATTGCTGACGGCTTACAATTCAAATCTGCTACCGGCAGCATTGCCTTCCAGTTTCGCTCAATTGAAGAAATTGAAGTATATATGGATGTCAGGCGCGAACCTAGTCGGTGAAATTCCTGATTGGATCGGAAATTTGACCGCCCTCGAGAAATTGGATTTGTCGAGGAACAATCTGACTGGTAAAATCCCGAGCAGTTTGTTTACGTTGGAAAATCTTACTTACGTGTACCTGTTCAAGAACAGGCTATCAGGAGAGATTCCTCAGCGGATTGAATCTAAAAGGATCAAGGAATACGACCTATCGGATAATCATTTGACCGGAGAAATTCCAGCGGCTATCGGCGATCTTCAGCAATTGACGGCTTTACTTCTCTCTTCAAATCGCTTATACGGAGAAATCCCAGAAAGCATCGGCCGACTTCCATTCTTAACAGACGTGAGACTGTTCGACAACAATTTAAACGGCACACTGCCGCCAGATTTCGGAGGAAATTTGATTCTTGTAAGTTTTCAGGTGAACAGCAATAAGCTCACCGGAAGCTTGCCGGAGCACTTGTGCTCCGGCGGTAAGCTCTTAGGAGTGACTGCTTTCGAGAATAATCTTAGTGGGGAATTGCCAGAATCGCTTGGGAATTGCGATAGCTTGATGATGGTTGATGTTCATAAGAACAACTTTTCTGGGAAAATTCCGACCGGTCTGTGGACGTCTCCGAATTTGACTTTTGTAGTGATGAGCGACAATTCTTTCACGGGTGAACTCCCAGAGAAATTCTCGAAGAATCTTGCAAGATTGGAAATCAGCAACAACAAATTTTCAGGGAAAATTCCATCTGGGTTATCTTCATTGTGGAATTTGACTGAGTTTGAAGCAAGCAACAATTTGTTGACCGGACAAATTCCTGAAGAACTCACTGCTCTTTCAAGGTTGAACACGCTGTTACTTGATGGAAATCAACTCACTGGAGAGCTTCCACGGACTATCATTTCATGGAGATCGTTGAACAATCTTAACCTCAGGCAAAATCGTCTTTCTGGTGAAATTCCCGACCAACTTGGTGGTTTACCAAGCCTTACTGATCTTGATCTCTCAGATAATCAACTTTCTGGTACGATTCCAACTCAACTAGGAAATTTGGAGCTGAATTTCCTCAACCTATCCTCTAATTTTCTGTCTGGGACAATCCCCATTGCGTTTGAAAACGCAATCTATGCAAGAAGCTTTTTGAACAATCCGAGTCTTTGTTCAAACAACGCAGTTCTAAAAATGGACAGCTGCAGGTTGAGATCTCAGAATTCGAGAAAGATTTCATCACAACATCTTGCTCTGATCGTAAGCTTGGGAATAATATTATCCATACTCTTCATACTTTCTGCTCTGTACATAATCAAAATCTACAGGAAGACTGGAATCAGAGGAGATATTGAATGGAAACTGACCTCATTTCAGAGGTTGAATTTCTCGGAGACAAATCTTTTATCTGGACTATCAGAAAACAACGTGATCGGAAGCGGTGGATCTGGGAAAGTTTATCGTATCCCAGTGAATAGTTTGGGTGATACAGTGGCCGTGAAGAGAATATGGAACAACAGAAAGTCAGATCACAAGCTGGAGAAAGAATTCATGGCGGAAGTGAAGATTCTCAGTTCAATTCGACATAACAATATAATCAAACTCCTCTGCTGCGTTTCTTGTAAAACATCACGACTTCTCGTTTATGAGTATATGGAGAAGCAAAGCCTGGATAAATGGCTGCACAAGAGGAACTCACCACCGAGAGTTACAGGGTCAAACCCTGTTTGCGGTGTCGCCCTTGATTGGCCAACGAGATTCCAAATTGCAGTGGGGGCTGCACAAGGCCTGTGTTACATGCACCATGAATGTTCACCTCCAGTAATTCACAGAGACTTGAAGTCCAGCAATATCTTACTGGATTCAGAATTCAATGCTAAAATAGCAGATTTTGGCTTGGCCAAGTTGCTGGTTAAGCAAGGGGAACCAGCTTCAGTCTCCGCCGTCGCCGGCTCTTTCGGATACATAGCTCCAGAGTATGCTCAAACACCAAGAATTAATGAGAAGATTGACGTATTTAGCTTTGGGGTTATTCTTCTGGAGTTGACGACGGGGAAGGAAGCTCTCAACGGTGACGAAAACTCGTCTCTAGCCGAGTGGGCTTGGGAGTACATTCAACAAGGCAAGCCACCAGCCGATGCATTGGATGAAGATGTGAAGGAGGCACAGTATCTTGATGAAATGTGCAGTGTTTTCAAACTTGGGGTAGTCTGCACTTCCAGTTTGCCGACCAGCCGGCCGACCATGAACCAGGCTTTGGAAATTTTGATCCGCAGCCGAACCTCGGCGCCCCAAAACCATGGGGACAAAAAGATTCAGATCGTGAAAGTTCTCTCCAATGGTCTCTGTTTTGACGATCAAGATTCGCCGTCTACGGTGGAGACTGGAGAGGACCCTGCACTCCAGCCACTGCTCGGAGCAGAAATGGCTATGGAGTTGACGGGTCGCCTTGGTTTGTATATTTGA | 3126 | 45.11 | MMLTLSSLLLFLETISFFLLLLCSHHVNSQLYQQEHSVLLRLNHFWQNQAPITHWRSSNDSHCTWPEIQCTNNSVTALLFQNYNLNGTFPPFICDLKNLTYLDLQLNFISGGFPTTLYNCSKLNYLDLSQNYFVGPIPDDVDRLSRLQFLNLGGNSFSGEIPASISRLSELRSLYLFVNQFNGTYPSEIGNLSNLEELLTAYNSNLLPAALPSSFAQLKKLKYIWMSGANLVGEIPDWIGNLTALEKLDLSRNNLTGKIPSSLFTLENLTYVYLFKNRLSGEIPQRIESKRIKEYDLSDNHLTGEIPAAIGDLQQLTALLLSSNRLYGEIPESIGRLPFLTDVRLFDNNLNGTLPPDFGGNLILVSFQVNSNKLTGSLPEHLCSGGKLLGVTAFENNLSGELPESLGNCDSLMMVDVHKNNFSGKIPTGLWTSPNLTFVVMSDNSFTGELPEKFSKNLARLEISNNKFSGKIPSGLSSLWNLTEFEASNNLLTGQIPEELTALSRLNTLLLDGNQLTGELPRTIISWRSLNNLNLRQNRLSGEIPDQLGGLPSLTDLDLSDNQLSGTIPTQLGNLELNFLNLSSNFLSGTIPIAFENAIYARSFLNNPSLCSNNAVLKMDSCRLRSQNSRKISSQHLALIVSLGIILSILFILSALYIIKIYRKTGIRGDIEWKLTSFQRLNFSETNLLSGLSENNVIGSGGSGKVYRIPVNSLGDTVAVKRIWNNRKSDHKLEKEFMAEVKILSSIRHNNIIKLLCCVSCKTSRLLVYEYMEKQSLDKWLHKRNSPPRVTGSNPVCGVALDWPTRFQIAVGAAQGLCYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKLLVKQGEPASVSAVAGSFGYIAPEYAQTPRINEKIDVFSFGVILLELTTGKEALNGDENSSLAEWAWEYIQQGKPPADALDEDVKEAQYLDEMCSVFKLGVVCTSSLPTSRPTMNQALEILIRSRTSAPQNHGDKKIQIVKVLSNGLCFDDQDSPSTVETGEDPALQPLLGAEMAMELTGRLGLYI | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 7803298 | 7806558 | + | Lag0034489.1 | Lac3g0961 | 601383 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0961 | 1041 | Pfam | Protein kinase domain | 694 | 974 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac3g0961 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 684 | 976 | IPR011009 | - | |
| Lac3g0961 | 1041 | Gene3D | Ribonuclease Inhibitor | 32 | 183 | IPR032675 | - | |
| Lac3g0961 | 1041 | Gene3D | Ribonuclease Inhibitor | 184 | 291 | IPR032675 | - | |
| Lac3g0961 | 1041 | Gene3D | Ribonuclease Inhibitor | 497 | 620 | IPR032675 | - | |
| Lac3g0961 | 1041 | Gene3D | Ribonuclease Inhibitor | 384 | 496 | IPR032675 | - | |
| Lac3g0961 | 1041 | Gene3D | Ribonuclease Inhibitor | 292 | 383 | IPR032675 | - | |
| Lac3g0961 | 1041 | SUPERFAMILY | L domain-like | 50 | 379 | - | - | |
| Lac3g0961 | 1041 | FunFam | Putative leucine-rich repeat receptor-like protein kinase family protein | 188 | 288 | - | - | |
| Lac3g0961 | 1041 | Pfam | Leucine Rich Repeat | 457 | 479 | IPR001611 | GO:0005515(InterPro) | |
| Lac3g0961 | 1041 | Pfam | Leucine Rich Repeat | 316 | 337 | IPR001611 | GO:0005515(InterPro) | |
| Lac3g0961 | 1041 | FunFam | Leucine-rich repeat receptor-like protein kinase PXL1 | 289 | 382 | - | - | |
| Lac3g0961 | 1041 | FunFam | Kinase family with leucine-rich repeat domain-containing protein | 772 | 993 | - | - | |
| Lac3g0961 | 1041 | FunFam | Receptor-like protein kinase HSL1 | 672 | 771 | - | - | |
| Lac3g0961 | 1041 | SMART | serkin_6 | 692 | 981 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac3g0961 | 1041 | SMART | LRR_typ_2 | 144 | 168 | IPR003591 | - | |
| Lac3g0961 | 1041 | SMART | LRR_typ_2 | 503 | 527 | IPR003591 | - | |
| Lac3g0961 | 1041 | SMART | LRR_typ_2 | 313 | 337 | IPR003591 | - | |
| Lac3g0961 | 1041 | SMART | LRR_typ_2 | 242 | 266 | IPR003591 | - | |
| Lac3g0961 | 1041 | SMART | LRR_typ_2 | 551 | 575 | IPR003591 | - | |
| Lac3g0961 | 1041 | ProSitePatterns | Protein kinases ATP-binding region signature. | 698 | 721 | IPR017441 | GO:0005524(InterPro) | |
| Lac3g0961 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 692 | 977 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac3g0961 | 1041 | PRINTS | Leucine-rich repeat signature | 245 | 258 | - | - | |
| Lac3g0961 | 1041 | PRINTS | Leucine-rich repeat signature | 551 | 564 | - | - | |
| Lac3g0961 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 674 | 771 | - | - | |
| Lac3g0961 | 1041 | FunFam | Leucine-rich receptor-like protein kinase family protein | 383 | 624 | - | - | |
| Lac3g0961 | 1041 | Pfam | Leucine rich repeat | 236 | 279 | IPR001611 | GO:0005515(InterPro) | |
| Lac3g0961 | 1041 | Pfam | Leucine rich repeat | 98 | 156 | IPR001611 | GO:0005515(InterPro) | |
| Lac3g0961 | 1041 | Pfam | Leucine rich repeat | 528 | 585 | IPR001611 | GO:0005515(InterPro) | |
| Lac3g0961 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 772 | 1001 | - | - | |
| Lac3g0961 | 1041 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 395 | 974 | IPR051716 | - | |
| Lac3g0961 | 1041 | SUPERFAMILY | RNI-like | 293 | 629 | - | - | |
| Lac3g0961 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 828 | 840 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac3g0961 | 1041 | FunFam | Receptor-like protein kinase HSL1 isoform A | 32 | 183 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g0961 | Lac-Chr3:7803298 | Lac6g1064 | Lac-Chr6:9754287 | 5.50E-126 | dispersed | |
| Lac3g0960 | Lac-Chr3:7793474 | Lac3g0961 | Lac-Chr3:7803298 | 3.40E-234 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 86078 | PF00069 | Pkinase | 2.20E-47 | CL0016 | Lac | PK |
Pathway information