Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0966 ATGGGGAGAGCGACGAGATGGCTCAAGAACTTGTTTGGGATTAAGAAAGAAAAAGAACCCACCAGAGAAAATTCCAACTACGGCGTCAAGAAGGATAAAAAACCCACTTCAAATTTCGCCGGAGACGCCGAGCTCTGCAACAATCCGGCCACAATACCGCCCAATTTATCGGCGGCGGAGGCGGCTTGGCTGAAATCGTTCTACTCGGAAACAGAGAAGGAACAGAGCAAGCACGCAATAGCAGTGGCTGCAGCCACGGCTGCCGCGGCCGACGCGGCGGTCGCTGCAGCACAAGCCGCCGTGGCGGTGGTTCGGCTGACCAGCCACGGAAGAGGCACCATGTTCGGCGGCGGCCGGGAAAGATGGGCCTCTGTCAAGATTCAAACTTGCTTCAGAGGGTATCTGGCGAGAAAAGCACTGCGAGCACTGAAAGGACTGGTGAAATTACAGGCGCTTGTGAGAGGATATTTAGTTCGTAAACAAGCAACAGCAACTCTTCACAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGCAGATTCATAAACGACGAAGCAATTAATAACAACAGACTTGAAATCCGAGCCCGAAAATCCACGGAGAGATTTGACGACACAAAAAGCGAACACACAGCTTCAGTACACAGCAGAAGGCTTTCGGCTTCATTAGACAACACAGCATTCACAGCACTTGAAGAAAGCCCCAAAATCGTGGAAATGGACACCGGCCGGCCGAAATCCTGGTCTCGCCGGACGAACACGTCGGCGTCGGAATTCGGCGACGACCCATTTCACCAAACGCTGTCGTCTCCACTCCCCTGCCGGACTCCGTCGCGCTTGCAGATCCCAGATTGCCGGAATTTCCACGACTCCGACTGGGGTCTCACCGGCGACGAGTGCCGTTTGATCTCGACGGCGCAGAGCACGCCACGATTCGTGAGCTCCGGCGGAACCAACGGCCCTCCGACGCCGGCGAAGAGCATGTGTGCTGATAATTTCTTCAGAGGGTACCTGAATTTCCCGAATTACATGGCGAATACACAATCGTTCAAGGCGAAATTGAGGTCTCACAGTGCTCCGAAACAGAGGCCGGAGCCGGGATCGAAGAAGAGGCTGTCGTTGAACGAATTGATGGAATCGAGAAGCAGCCTTAGCGGAGTTCGAATGCAGAGGTCTTGTTCGCATGTTCAAGAAGCCATTAATTTCAAGAACGCTGTGATGAGCAAACTCGACCGGCCGTCGGAATTCAACAATTTGCAGAGAAGATTATGA 1290 53.1 MGRATRWLKNLFGIKKEKEPTRENSNYGVKKDKKPTSNFAGDAELCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRTRRFINDEAINNNRLEIRARKSTERFDDTKSEHTASVHSRRLSASLDNTAFTALEESPKIVEMDTGRPKSWSRRTNTSASEFGDDPFHQTLSSPLPCRTPSRLQIPDCRNFHDSDWGLTGDECRLISTAQSTPRFVSSGGTNGPPTPAKSMCADNFFRGYLNFPNYMANTQSFKAKLRSHSAPKQRPEPGSKKRLSLNELMESRSSLSGVRMQRSCSHVQEAINFKNAVMSKLDRPSEFNNLQRRL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7855806 7857286 + Lag0034494.1 Lac3g0966 601388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0966 429 ProSiteProfiles IQ motif profile. 144 171 - -
Lac3g0966 429 MobiDBLite consensus disorder prediction 246 278 - -
Lac3g0966 429 Pfam Protein of unknown function (DUF4005) 325 391 IPR025064 -
Lac3g0966 429 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Lac3g0966 429 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Lac3g0966 429 MobiDBLite consensus disorder prediction 357 376 - -
Lac3g0966 429 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Lac3g0966 429 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Lac3g0966 429 Gene3D - 117 168 - -
Lac3g0966 429 ProSiteProfiles IQ motif profile. 120 148 - -
Lac3g0966 429 PANTHER IQ-DOMAIN 5-RELATED 6 396 - -
Lac3g0966 429 MobiDBLite consensus disorder prediction 253 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2258 Lac-Chr12:39709352 Lac3g0966 Lac-Chr3:7855806 2.50E-17 dispersed
Lac3g0966 Lac-Chr3:7855806 Lac7g0706 Lac-Chr7:5672673 4.50E-26 dispersed
Lac11g0779 Lac-Chr11:8244628 Lac3g0966 Lac-Chr3:7855806 9.70E-57 wgd
Lac3g0966 Lac-Chr3:7855806 Lac4g2932 Lac-Chr4:47671807 1.40E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0966 - - - 0.0