Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0988 ATGATGATCGGCGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTGACGATACCGGAGGAGCCTGCAAGTGAGACGCGGTTTCCTTTTCCGTTGAGCGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGCGATTATTCTCCCTATTATTTGCAGGAAGCCCTAGCTGCACTCCAGCGATATTTTCCTCCGACGAGCGAGGCGGAGATTGAATCTGATTCCGAGCTGTCCGGTCGAGAATCGGACGTTCCGGTGGATGCTTACTCTTGCGATCATTTTCGGATTTTCGAGTTCAAGGTGAGGAAGTGCACGCGTGGACGGTCTCATGACTGGACGGAGTGTCCGTATGCTCATCCCGGCGAGAAGGCTCGCCGGAGGGATCCGAGGAAATTTCATTACTCTGGTACGGCGTGCCCTGATTTTCGAAAAGGAAACTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTGTTTGAGTGCTGGCTTCATCCCGCTCGTTACCGGACTCAGCCATGTAAGGATGGGACTAACTGTCGAAGGAGAGTCTGTTTCTTCGCTCACACTCCCGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCTCGAGCTCGCCTGAATCGTATGATGAATCCCCTCTGCGGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCATCTCCGGTGTCTGGTTCACCGTCGGCGACTCCGGTGGACTCTCCACCGATGTCACCGATGACTCGCTCGCTCGGCCGGTCTCTTGGCTCGAGTTCCATCAATGAAATGGTCGCATCCCTCCGGAACATGCATCTGAGCAAGGTCAAATCTCTACCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTATCCATCTCGAATCCGCCCTGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCGACGAGTCATGGAGTTGGGCTGCTAGACTTCTCCGACCATGGATTCGATGAGGAACCGGTGATGGAGCGAGTCGAATCGGGAAGGCAGCTGAGGGCAAAGATGCTGGAGAAGCTGAGCAAAGAAAATTCTCTGGACCTGGCCGATTCTTCAAGTCCTTCATCCTGCACACCGGATGTTGGGTGGATATCAGAGCTGGTGAAGTGA 1149 53.96 MMIGERHRPGPVVHITPLTIPEEPASETRFPFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYFPPTSEAEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSSSSPESYDESPLRDGSCAKSLPFLSSPVSGSPSATPVDSPPMSPMTRSLGRSLGSSSINEMVASLRNMHLSKVKSLPSSWNVQIGSPGYPSRIRPGFCSLPTTPTRAPTSHGVGLLDFSDHGFDEEPVMERVESGRQLRAKMLEKLSKENSLDLADSSSPSSCTPDVGWISELVK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8046319 8047467 - Lag0034516.1 Lac3g0988 601410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0988 382 MobiDBLite consensus disorder prediction 199 260 - -
Lac3g0988 382 MobiDBLite consensus disorder prediction 359 373 - -
Lac3g0988 382 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872(InterPro)
Lac3g0988 382 SMART c3hfinal6 171 194 IPR000571 GO:0046872(InterPro)
Lac3g0988 382 SMART c3hfinal6 136 162 IPR000571 GO:0046872(InterPro)
Lac3g0988 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 161 IPR000571 GO:0046872(InterPro)
Lac3g0988 382 PANTHER UNKEMPT FAMILY MEMBER 50 382 IPR045234 -
Lac3g0988 382 MobiDBLite consensus disorder prediction 199 216 - -
Lac3g0988 382 FunFam Zinc finger CCCH domain-containing protein 66 94 162 - -
Lac3g0988 382 MobiDBLite consensus disorder prediction 229 260 - -
Lac3g0988 382 Pfam RNA-binding, Nab2-type zinc finger 176 192 - -
Lac3g0988 382 MobiDBLite consensus disorder prediction 356 375 - -
Lac3g0988 382 Gene3D - 136 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0988 Lac-Chr3:8046319 Lac5g2755 Lac-Chr5:45962772 5.00E-45 dispersed
Lac10g2489 Lac-Chr10:38561500 Lac3g0988 Lac-Chr3:8046319 6.00E-52 transposed
Lac11g0514 Lac-Chr11:5348094 Lac3g0988 Lac-Chr3:8046319 8.10E-52 transposed
Lac13g1129 Lac-Chr13:9920605 Lac3g0988 Lac-Chr3:8046319 2.40E-47 transposed
Lac6g3056 Lac-Chr6:48163544 Lac3g0988 Lac-Chr3:8046319 4.80E-123 transposed
Lac9g2386 Lac-Chr9:43013698 Lac3g0988 Lac-Chr3:8046319 5.60E-50 transposed
Lac12g0742 Lac-Chr12:7759172 Lac3g0988 Lac-Chr3:8046319 2.40E-58 wgd
Lac2g0440 Lac-Chr2:3241725 Lac3g0988 Lac-Chr3:8046319 2.10E-90 wgd
Lac3g0988 Lac-Chr3:8046319 Lac6g0213 Lac-Chr6:1667496 7.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23623 PF00642 zf-CCCH 2.80E-06 CL0537 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0988 - - - 0.0