Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1006 ATGGAGAAGGGTCATCTTGATGTGGCTGGGAAAGTGGTGGTCGTCGCCATTAAAGCAACCTCGAAGGAAGTTTCTAAGGCTGCTCTGGTTTGGGCTTTAACTCATGTTGTTCAGCCCGGAGATCATATCAAGCTCCTTGTGGTTATCCCTTCTCATCAATCAAGTAAATGGATGCGAGGATTTTCCCGATTTACCAGCGACTGTGCGATCGGTCATCTGAGAACTTCATCAGGAACCCTTTCAGATCAGAAGGATGACATTGTCCATTCATGTTCTCAAATGGTACATCAGCTTCATGGTGCATATGACCCACTGAAGATAAAAGTCAGGATCAAAGTTCTTTCTGGTTTGGCTCGGGGTATGGTGGCTACTGAAGCTAAGAAAGCTCAATCGAACTGGGTGATATTGGACAAACACTTGAAAGATGAAAGGAAAAACTGTTTGGAAGAGCTGCAATGCAATGTTGTTCTTATGAAGAAATCCCAGCCTAAGGTTCTTCGTCTGAATTTGATGGAATCCCCTAAGATGAATTCTAGAGAAGCTTGGATATCGTCACATGAATTAGATGTTTCTCAGAAGTGTCTTAAAAGCTACTTTGATGAATCAGTCATGTTTGGGGCTCCTGATGTGACTCCTGTCAGTACTCCTGATGTAGAGTCTCCTCTAACCTTAACTGATGTTGGAACATCATCAATATCGAGCTCGGATGTGGGCAGTTCATCTTTGTTCTCTGGGATATGTGGCAGCTTGAGAAATGAATCCAGAACAGCAGCCGAAGGAGGGAGAAACTTGTCTGGATCCGAATGTGATTCTGAGAGTGAAAAGCAAACTCCCTCAGTTTCATATTTCCAGCGTTGTATGGTTGATATTATAAGTTCTAGGCGTAAATTCCAGCAACATACAATGGAAGAATCACAAAATACTCATCATAGACCTCCGGCTTCAACACGTCAAGGTCCAGTTAAGAAAATGTCGACTCTTTCTCTAGAACCCGGCACTGATGTGGTGAATCGAAATAGCGATATTAGCTCAAGCAGAAACATAAGGAACACGGTTTCATTATCCAGGAAAGCACCTCTAGGCCCTCCTCCACTGTGTTCTATGTGTCAACACAAGGCCCCTGCATTTGGGAATCCTCCTAGATGGTTTACTTATGCAGAACTGGAAGTTGCTACAAGCGGATTTGCACAAACAAATTTTTTGGCTGAGGGTGGATATGGATCTGTGCACCGAGGCGTCTTACCAGATGGACAAGTTGTTGCTGTCAAGCAATATAAACTGGCTAGTACCCAGGGGGATCGAGAATTTTGTTCAGAAGTTGAGGTCTTAAGTTGTGCCCAACATCGGAACGTCGTGATGCTCATTGGATTTTGTGTCGAGGGTGGAAGAAGATTGCTTGTTTATGAATACATTTGCAATGGATCTCTTGATTCCCATCTTTATGGAAGAAATCGTGATCCACTGAAATGGTCTGCACGACAAAAAATTGCAGTCGGAGCTGCTCGTGGTTTAAGATACCTTCACGAAGAATGTAGAGTGGGGTGTATTGTGCACCGCGATATCCGCCCAAACAATATCCTCCTTACTCATGATTTCGAACCCCTAGTTGGAGATTTTGGGCTGGCAAGGTGGCAGCCGGATGGTGACCTAGCAGTAGAAACCAGAATCCTTGGAAGATTTGGCTACCTGGCTCCAGAGTATGCACAGAGTGGCCAAATCACGGAGAAAGCCGATACGTACTCATTCGGCGTAGTTTTGCTGGAACTTGTGACTGGACGCAAGGCAATCGATCTAAATCGTCCCAAGGGCCAGCAGTGCCTCACTGAATGGGCACGGAACCTGCTGCGAAAAGGTGCAATCTCAGAACTGGTCGATCCATGCTTGATGAACTGTTACTCAGACGAGGAAGTTCACCGTATGCTGCAATGCGCTTCCTTGTGTATCAAGCACGACCCGTATGTAAGACCGCGTATGTCTCAGGTGCTTCGGGTTTTGGAGGGCGACATCGTTTTATAA 2016 45.34 MEKGHLDVAGKVVVVAIKATSKEVSKAALVWALTHVVQPGDHIKLLVVIPSHQSSKWMRGFSRFTSDCAIGHLRTSSGTLSDQKDDIVHSCSQMVHQLHGAYDPLKIKVRIKVLSGLARGMVATEAKKAQSNWVILDKHLKDERKNCLEELQCNVVLMKKSQPKVLRLNLMESPKMNSREAWISSHELDVSQKCLKSYFDESVMFGAPDVTPVSTPDVESPLTLTDVGTSSISSSDVGSSSLFSGICGSLRNESRTAAEGGRNLSGSECDSESEKQTPSVSYFQRCMVDIISSRRKFQQHTMEESQNTHHRPPASTRQGPVKKMSTLSLEPGTDVVNRNSDISSSRNIRNTVSLSRKAPLGPPPLCSMCQHKAPAFGNPPRWFTYAELEVATSGFAQTNFLAEGGYGSVHRGVLPDGQVVAVKQYKLASTQGDREFCSEVEVLSCAQHRNVVMLIGFCVEGGRRLLVYEYICNGSLDSHLYGRNRDPLKWSARQKIAVGAARGLRYLHEECRVGCIVHRDIRPNNILLTHDFEPLVGDFGLARWQPDGDLAVETRILGRFGYLAPEYAQSGQITEKADTYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARNLLRKGAISELVDPCLMNCYSDEEVHRMLQCASLCIKHDPYVRPRMSQVLRVLEGDIVL 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8195040 8198905 + Lag0034534.1 Lac3g1006 601428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1006 671 PANTHER OS01G0750732 PROTEIN 146 666 IPR050885 -
Lac3g1006 671 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 367 470 - -
Lac3g1006 671 ProSitePatterns Tyrosine protein kinases specific active-site signature. 516 528 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1006 671 ProSiteProfiles Protein kinase domain profile. 395 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1006 671 Pfam Protein tyrosine and serine/threonine kinase 399 664 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1006 671 Gene3D Transferase(Phosphotransferase) domain 1 471 669 - -
Lac3g1006 671 SUPERFAMILY Protein kinase-like (PK-like) 376 665 IPR011009 -
Lac3g1006 671 CDD STKc_IRAK 401 667 - -
Lac3g1006 671 SMART tyrkin_6 395 665 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Lac3g1006 671 MobiDBLite consensus disorder prediction 254 276 - -
Lac3g1006 671 Gene3D Phosphorylase Kinase; domain 1 366 470 - -
Lac3g1006 671 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 471 671 - -
Lac3g1006 671 Gene3D HUPs 11 164 IPR014729 -
Lac3g1006 671 MobiDBLite consensus disorder prediction 297 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2425 Lac-Chr12:41339452 Lac3g1006 Lac-Chr3:8195040 5.20E-227 dispersed
Lac13g0818 Lac-Chr13:6581854 Lac3g1006 Lac-Chr3:8195040 8.10E-77 dispersed
Lac3g1006 Lac-Chr3:8195040 Lac6g2998 Lac-Chr6:47585561 3.00E-85 dispersed
Lac3g1006 Lac-Chr3:8195040 Lac2g0245 Lac-Chr2:1855606 3.20E-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86080 PF07714 PK_Tyr_Ser-Thr 2.30E-40 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1006 - - - 0.0