Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1027 ATGGAGGTTCTGATTCCACTGATTCTTCAGCTGGTGATTCTCTGTGTCATTGCTAATGCTTCCGAGCTTCGGGAAATTGCAGGATTCAGCAATTCTCCACCCCCTTCAACTTTTTCTGCATTTCCTCCAGTTGGAGGAACACCTGGTCCAGTCCAACATGATAAGTCGTTGATAAGCAATGGACCAAGCTCAGCGCCCCAGCAGAATGAGTCTACTTCGCAATCACCACTCATGTTACCGCCAACTGCACCAGTTCCATTGCCTGACACGATCAAAGGGTTTATACCGTCCGCATCACCTGGTGCTCCGACCGAGTTGCCACCATTTAATAGCATGCCCCATCCACCTTTACCAGTTCAACCAAATGCACCATTGATTTCACCAAGTGCACCAGAAGCAGAAGGTAAGACACCAGTGAATGAGACTCCTCTGCCAATGGATTCTCCAGGTCCAGTTGTGTCATCTTCAAATTCTCCACAATATCCTCCAGCAAGTTCCCCACATGAGCAAACAAATTTTTCATCAAGTTCTCATCAAAGCACTTCGCCAAATATGGCTCCCATCCCTGAGCCAATTTCTCCAGCGAGCAAGTTTCCTAAGAATTCGCCTGCTAGTCATCCAGTAGAGCCTGAAAGACCTCCATCCATATTACCAGAGCCTGACATTTCTCCAGCCGTTGCTATTTCCCCAAAAGCTAGTGACAGAAAGAGATTAGAAGCACCAGCAGCTGCACCTTATAATGCATTGCCTAAGTATATGCCACCTGTGAATCATTCCCCAGAAGAAGCTCCTTCCACTCACAATGACATGGGACACTCTCATGACGCTCAACAGCCAATTATTTCGCCACAAAAGGCTCCATTTCATAGAGTAAATCTTTCTCCAACATCTCCTCCTATGCCCTCAAATTATAAGCATCACAGGAGTAATCCTTTCATCAGTCAAGCACCTGCACCATCATATCCGATTTCCTCTCGCACAACAGAAACACCAGGTCCAATTGTTTCTGCAGCAGAACATTTGCATGGTAGACGACAATATGCACCACCTACGGAATCAGAACCTTTGCCGATATCTCATCCTCCGCTTGGGACTCATGTTTCACCTTCTCCTTCACCTTCTCCTTCACCATACCAAAGAATGTCTGGACATACTAAAAGACATTCTTATCCCCCTAAAGCTTCACCATTGAGACCTTCGGCAAAGAGCCCAAAGATGCCACCACTGCCACCAATACATGCACTGCCTCCTCCACCTCCCAATGAAGATTGTTCAGCTACCCTGTGCACCGAACCATATACAAACACTCCCCCAGGATCTCCCTGCGGTTGTGTTTGGCCCATGCAAATTGGACTTCGCCTCAGTGTTTCGCTATATACTTTCTTCCCTCTGGTTTCGGAGCTGGCAGCAGAAATTGCTGCTGGAGTGTTTGTAAAGCAAAGTCAAGTTCGCATTATTGGAGCCAATGCAGCTAACCAGCAACCAGATAAGACTGTTGTCCTTATCGACTTAGTCCCACTTGGAGAAAAATTTGACAATACAACAGCCTTTTTGACTTACCAAAGGTTTTGGCATAAGAAAGTTTCTATCAAAGCTTCCTATTTTGGGAACTATGAAGTATTATATGTTCGATATCCAGGTTTACCTCAATCACCTCCTTCTGGAGATTCAGGAATAGACAATGAGCCTTATTTCAGTAATAGTAACGATGCAAGGGCAGTAAAACCGATAGGCGTTGATGTGCACAACAGACAGCAGAAAGATAGGATAAGTGGTGGCACAATTGCCATCATCGCCCTATCAACTACTGTTGCAGTGGTCTTATGTGTTGCTACTGCTTGGATTTTGCTCTTCAGACGGAATGATGGCCTTTGTCAGCCAAAACCAACTCCACGTGTTTCGCTATCTTCCCTCAATAAACCATCAGGTGCTGGTGGATCAGTTATGGCAACCATGCCTAGTTCTGCCTCTTTATCCTTTGGATCTAGCATTGCCCCATATTCAGGATCAGCCAAGACATTCAGTGCCTCTGACATAGAGATAGCCACAAATAATTTTGATCCTTCAAGAGTATTGGGGGAGGGTGGCTTTGGACGTGTTTACCGTGGCACACTCGAAGATGGTACCGAAGTAGCAGTCAAAGTTCTCAAGAGAGATGATCATCAAGGTGGTCTAGAATTCTTGGCTGAAGTTGAAATGCTTAGCCGCCTCCACCACAGAAATTTGGTCAAGTTGATTGGAATATGTACCGAGGAGCGTAACCGCTCCCTGGTGTATGAACTCATTCCAAATGGCAGTGTGGAATCTCACTTACATGGTGTTGATAAGGAGACTGCCCCACTTGATTGGGGTGCCCGGATGAAGATAGCACTTGGAGCTGCTAGGGGTTTATCCTATCTACATGAGGATTCAAGTCCTAGAGTCATACATCGAGACTTCAAATCTAGCAATATCTTGCTAGAACAAGATTTTACACCAAAAGTTTCTGACTTCGGATTGGCTCGAACTGCAATGGATGAGGAAAGCAGACACATATCGACACGTGTCATGGGAACTTTCGGATATGTGGCTCCGGAGTATGCAATGACTGGTCATCTACTTGTGAAGAGTGATGTTTACAGTTACGGGGTTGTTCTTCTTGAGCTATTAACTGGCAGAAAACCAGTAGATATGTCACAACCGCCCGGTGAAGAAAATCTTGTTGCTTGGGCTCGTCCACTCCTCACAAGCAAAGAAGGCTTAGATATTATAGTTGACAAATCATTAGATCCTAATGTTCCTTTTGAAAATATTGCCAAAGTGGCAGCCATTGCTTCAATGTGTGTGCAACCAGAGGTGTCACATCGACCTTTCATGGGCGAGGTTGTTCAAGCATTGAAACTAGTTTGCAACCAGTGCAATGAGACTCGAGAAGCAAGCTCCCAGGCTAGTTCAAGCCCAGAAAATTCATTTATGGATATGAATGATGAGGCATCAAGTTCAAGACACATGCTAGAATCGTTCCATAGTGAATATTTAGTACCTAACTCAATTTTGAGTCTCGATGGCTTCGATACGCGTCTCTCAATTTCAGACTTGTTAAATACTTCCATCGGTATCGGAATGCAGGAATCTAGATCACTCGAAAGATGCTTCAGTTCTGGTCCTCTTAGAATTGCAAAAGGAAAGAGGCACTTCTGGCAAAGAATGAGAAGATACTCAGGAAGTAGCATAAGTGAACATGGAATGCCTAGATTATGGTCAGGCTCTACATAA 3255 44.95 MEVLIPLILQLVILCVIANASELREIAGFSNSPPPSTFSAFPPVGGTPGPVQHDKSLISNGPSSAPQQNESTSQSPLMLPPTAPVPLPDTIKGFIPSASPGAPTELPPFNSMPHPPLPVQPNAPLISPSAPEAEGKTPVNETPLPMDSPGPVVSSSNSPQYPPASSPHEQTNFSSSSHQSTSPNMAPIPEPISPASKFPKNSPASHPVEPERPPSILPEPDISPAVAISPKASDRKRLEAPAAAPYNALPKYMPPVNHSPEEAPSTHNDMGHSHDAQQPIISPQKAPFHRVNLSPTSPPMPSNYKHHRSNPFISQAPAPSYPISSRTTETPGPIVSAAEHLHGRRQYAPPTESEPLPISHPPLGTHVSPSPSPSPSPYQRMSGHTKRHSYPPKASPLRPSAKSPKMPPLPPIHALPPPPPNEDCSATLCTEPYTNTPPGSPCGCVWPMQIGLRLSVSLYTFFPLVSELAAEIAAGVFVKQSQVRIIGANAANQQPDKTVVLIDLVPLGEKFDNTTAFLTYQRFWHKKVSIKASYFGNYEVLYVRYPGLPQSPPSGDSGIDNEPYFSNSNDARAVKPIGVDVHNRQQKDRISGGTIAIIALSTTVAVVLCVATAWILLFRRNDGLCQPKPTPRVSLSSLNKPSGAGGSVMATMPSSASLSFGSSIAPYSGSAKTFSASDIEIATNNFDPSRVLGEGGFGRVYRGTLEDGTEVAVKVLKRDDHQGGLEFLAEVEMLSRLHHRNLVKLIGICTEERNRSLVYELIPNGSVESHLHGVDKETAPLDWGARMKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLEQDFTPKVSDFGLARTAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGEENLVAWARPLLTSKEGLDIIVDKSLDPNVPFENIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCNETREASSQASSSPENSFMDMNDEASSSRHMLESFHSEYLVPNSILSLDGFDTRLSISDLLNTSIGIGMQESRSLERCFSSGPLRIAKGKRHFWQRMRRYSGSSISEHGMPRLWSGST 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8360370 8365871 - Lag0034555.1 Lac3g1027 601449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1027 1084 MobiDBLite consensus disorder prediction 246 278 - -
Lac3g1027 1084 ProSiteProfiles Protein kinase domain profile. 686 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1027 1084 MobiDBLite consensus disorder prediction 53 78 - -
Lac3g1027 1084 MobiDBLite consensus disorder prediction 295 332 - -
Lac3g1027 1084 CDD STKc_IRAK 692 960 - -
Lac3g1027 1084 MobiDBLite consensus disorder prediction 206 220 - -
Lac3g1027 1084 MobiDBLite consensus disorder prediction 101 125 - -
Lac3g1027 1084 MobiDBLite consensus disorder prediction 295 420 - -
Lac3g1027 1084 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1027 1084 SUPERFAMILY Protein kinase-like (PK-like) 665 959 IPR011009 -
Lac3g1027 1084 MobiDBLite consensus disorder prediction 397 420 - -
Lac3g1027 1084 Gene3D Phosphorylase Kinase; domain 1 662 761 - -
Lac3g1027 1084 MobiDBLite consensus disorder prediction 149 186 - -
Lac3g1027 1084 FunFam receptor-like serine/threonine-protein kinase ALE2 659 761 - -
Lac3g1027 1084 MobiDBLite consensus disorder prediction 354 376 - -
Lac3g1027 1084 ProSitePatterns Protein kinases ATP-binding region signature. 692 714 IPR017441 GO:0005524(InterPro)
Lac3g1027 1084 MobiDBLite consensus disorder prediction 261 278 - -
Lac3g1027 1084 PANTHER OS01G0750732 PROTEIN 421 1006 IPR050885 -
Lac3g1027 1084 FunFam Receptor-like serine/threonine-protein kinase ALE2 762 979 - -
Lac3g1027 1084 Pfam Protein tyrosine and serine/threonine kinase 690 959 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1027 1084 Gene3D Transferase(Phosphotransferase) domain 1 762 986 - -
Lac3g1027 1084 MobiDBLite consensus disorder prediction 31 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1027 Lac-Chr3:8360370 Lac4g2132 Lac-Chr4:40926327 5.50E-89 dispersed
Lac11g2562 Lac-Chr11:41686795 Lac3g1027 Lac-Chr3:8360370 2.70E-178 transposed
Lac12g1428 Lac-Chr12:24698012 Lac3g1027 Lac-Chr3:8360370 1.40E-70 transposed
Lac5g3115 Lac-Chr5:48757763 Lac3g1027 Lac-Chr3:8360370 1.20E-14 transposed
Lac8g0675 Lac-Chr8:12103119 Lac3g1027 Lac-Chr3:8360370 6.10E-41 transposed
Lac12g0765 Lac-Chr12:8015924 Lac3g1027 Lac-Chr3:8360370 9.00E-85 wgd
Lac13g1155 Lac-Chr13:10137504 Lac3g1027 Lac-Chr3:8360370 2.40E-31 wgd
Lac3g1027 Lac-Chr3:8360370 Lac4g2984 Lac-Chr4:48097144 1.20E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86081 PF07714 PK_Tyr_Ser-Thr 7.30E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1027 - - - 0.0