Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1052 ATGGAGAATCATCAGGAGGTTGAAGCCGAGGAAGAAGATGGAGTGGGACCAACCGCCGTGGAGGAGGAAGAAAATGGAGTTGTGGGTTCGAGCTTGACTCTGGAGAAGGTCGCTGCGGCCAAACAGTACATTGAGAATCATTACAAGGCTCAAAAGAAGCACATTCAAGAGCGCAAAGAGAGGCGCTCGGTGCTAGAAAAGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGCACAGAGACTCAATACATGCGGCTGAAAAGGCATAAAATTTGTGTTGAAGATTTCGACCTTTTGACAATTATTGGTCGAGGTGCTTTCGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCAACATTTATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTGACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATATTTGTATCTGATCATGGAGTATCTTCCTGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACGGAAACTGTGGGTAGATTTTATGTCGCCCAAAGTGTTTTGGCAATAGAGTCGATTCATAAACATAACTACATTCACAGAGACATAAAACCTGATAACCTTCTGCTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGTGCAAATCTGTCTTCTATAAATGAAAATGAAGCCTTTGATGATGATAACTTGCCCGACACAGTGGACGTGGATGAGAGCGTTCCAGGTAAAAAAAGTGGGAGGCGCTGGAAGAGCCCCTTGAACAACTTCAACATTGGCAGATTAACAGAAGGAAACTGGTATGAGAAAATTTCTCTTCATGTTCTAGAACTGTGGACTTCCATACGTAGCATTTTCCACCGTTGGCACTCCAGATTACATAGCTCCAGAAGTGTTGCTAAAAAAGGATACGGTGTGGAATGTGATTGGTGGTCTCTTGGTGCAATAACGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACCACATGCAGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACTTGATCAGTAGGCTGCTTTGCGATGCTGAGCATAGGCTTGGTTCTGGAGGCGCAGACCAAATCAAGGCTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTATGATATAGATGCAGCATTTAAGCCCGAGGTCAATGGGGAGCTTGATACACAGAATTTTATGCAATTTGAGGAGGTTGATCCACCGCCAACTAGAACTGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAAAGGGCTACACCATTCTTTTGATTTGAAGTCAAGCACCACCCCTATTCGAACTTCATCCGTTGACTCTACACAAAGTGACTCGGCATTGAACTACTCTACCAACTACTCAACAGATGACAGGGAAGCCATATTGGCATCATCAGGGGATGCTTTGTCACAGTAA 1659 42.8 MENHQEVEAEEEDGVGPTAVEEEENGVVGSSLTLEKVAAAKQYIENHYKAQKKHIQERKERRSVLEKKLASSDVSEEEQINLLKDLERTETQYMRLKRHKICVEDFDLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASDCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVGRFYVAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCANLSSINENEAFDDDNLPDTVDVDESVPGKKSGRRWKSPLNNFNIGRLTEGNWYEKISLHVLELWTSIRSIFHRWHSRLHSSRSVAKKGYGVECDWWSLGAITYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDLISRLLCDAEHRLGSGGADQIKAHPWFKDTEWDKLYDIDAAFKPEVNGELDTQNFMQFEEVDPPPTRTGSGPIRKMLLTPKDLSFVGYTYKNFEAVKGLHHSFDLKSSTTPIRTSSVDSTQSDSALNYSTNYSTDDREAILASSGDALSQ 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8601265 8609089 + Lag0034580.1 Lac3g1052 601474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1052 552 MobiDBLite consensus disorder prediction 1 19 - -
Lac3g1052 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1052 552 ProSiteProfiles AGC-kinase C-terminal domain profile. 430 502 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1052 552 Gene3D Transferase(Phosphotransferase) domain 1 192 446 - -
Lac3g1052 552 CDD MobB_NDR_LATS-like 40 101 - -
Lac3g1052 552 ProSiteProfiles Protein kinase domain profile. 106 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1052 552 SMART serkin_6 106 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1052 552 CDD STKc_NDR_like 104 493 - -
Lac3g1052 552 FunFam Non-specific serine/threonine protein kinase 338 449 - -
Lac3g1052 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 498 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lac3g1052 552 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524(InterPro)
Lac3g1052 552 FunFam Non-specific serine/threonine protein kinase 190 257 - -
Lac3g1052 552 Pfam Protein kinase domain 341 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1052 552 Pfam Protein kinase domain 108 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1052 552 SUPERFAMILY Protein kinase-like (PK-like) 88 478 IPR011009 -
Lac3g1052 552 FunFam Non-specific serine/threonine protein kinase 67 189 - -
Lac3g1052 552 Gene3D Phosphorylase Kinase; domain 1 97 191 - -
Lac3g1052 552 MobiDBLite consensus disorder prediction 1 27 - -
Lac3g1052 552 Pfam Protein kinase C terminal domain 448 492 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1052 552 SMART pkinase_C_6 430 494 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1052 Lac-Chr3:8601265 Lac4g1857 Lac-Chr4:37880167 4.10E-165 dispersed
Lac3g1052 Lac-Chr3:8601265 Lac3g1054 Lac-Chr3:8628359 5.60E-13 proximal
Lac2g0475 Lac-Chr2:3485174 Lac3g1052 Lac-Chr3:8601265 4.80E-200 wgd
Lac3g1052 Lac-Chr3:8601265 Lac6g3082 Lac-Chr6:48366392 1.00E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86082 PF00069 Pkinase 1.60E-42 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1052 K08790 - csv:101208238 897.501