Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1054 ATGCTTAAGTCAGCAAACGGAACGGTATGGAGTGAAAAAGTAAGAGCAAGAGGAGAGAGTAGAAAATATAGAATAGTGTTTAGGGATAGAATTCGGAGTCCCTTCTTCAGTGGTGAAGAGGGAGGGTATAAATACATGTTCATCCTCCTAGCGCTTTTAGGGTTTCAGAGGCGTTTTAGGTCAAACAAGGCAAAACCGGGGCTGATGGAGGCGGTAGGGCCTAACGGCATCGGACGGACTCGGCCTCGGCCCGAGCAGGGGGTCGGGCCAAAAACCCAAACCCTTCGGTCCTGGCCCGTCCCACTTGTCGGTTTTGCCTCCTTGGTCCATCTTTCAGCCCGATTTCTCCCCGGTTGTCCTCGGCTGCGGTCTGGAAGTGGAAGAGATCCGCCATCAATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTCCCTCAAGAAGATCAATCCATAGCCAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTGAACAGAGATGGGGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACTGATGATCAGTTGAGTTTAGCGGACATTGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTACAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATCGAGGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGTGGATCTTTAGCTGATTTTCTGAAAAAGGTGCTGAAGGGGTTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATCGTTGGAGAAAGATATGACAATAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTCGAATGTGCAACCGGAAAATTCCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAACCTCCTTCTGCTCCAGCCGACCAATTTACTCCCAACTTCTGTTCCTTCATTTCTGCATGTTTGCAAACGGACCCAAAGGATAGACTGTCTGCGCGTGAACTCTTGGAACATCCTTTCATCAAGATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1419 45.03 MLKSANGTVWSEKVRARGESRKYRIVFRDRIRSPFFSGEEGGYKYMFILLALLGFQRRFRSNKAKPGLMEAVGPNGIGRTRPRPEQGVGPKTQTLRSWPVPLVGFASLVHLSARFLPGCPRLRSGSGRDPPSMRKGGFSNNLNLKLNLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLQTDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8628359 8632807 - Lag0034582.1 Lac3g1054 601476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1054 472 ProSitePatterns Protein kinases ATP-binding region signature. 209 232 IPR017441 GO:0005524(InterPro)
Lac3g1054 472 ProSiteProfiles Protein kinase domain profile. 203 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1054 472 FunFam mitogen-activated protein kinase kinase 3 273 468 - -
Lac3g1054 472 Gene3D Phosphorylase Kinase; domain 1 179 281 - -
Lac3g1054 472 MobiDBLite consensus disorder prediction 70 93 - -
Lac3g1054 472 SMART serkin_6 203 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1054 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1054 472 FunFam Mitogen-activated protein kinase kinase 6 173 282 - -
Lac3g1054 472 Pfam Protein kinase domain 205 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1054 472 SUPERFAMILY Protein kinase-like (PK-like) 188 454 IPR011009 -
Lac3g1054 472 Gene3D Transferase(Phosphotransferase) domain 1 282 468 - -
Lac3g1054 472 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 147 467 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac3g1054 472 CDD PKc_MAPKK_plant_like 201 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1054 K20603 - - csv:101204545 652.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1054 Lac-Chr3:8628359 Lac6g3082 Lac-Chr6:48366392 2.20E-143 dispersed
Lac3g1052 Lac-Chr3:8601265 Lac3g1054 Lac-Chr3:8628359 5.60E-13 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1054 . 160 470 MAP Kinase Kinase Gene Family AT4G26070 68.1 3.3e-128 455.7
Lac6g3082 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 67.5 8.0e-127 451.1
Lac6g3038 . 16 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 2.2e-108 389.8
Lac3g1054 . 133 443 MAP Kinase Kinase Gene Family AT4G29810 67.5 3.6e-127 452.2
Lac6g3082 . 10 325 MAP Kinase Kinase Gene Family AT4G29810 64.8 1.8e-118 423.3
Lac6g3038 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 8.9e-110 394.4
Lac8g0237 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 2.2e-229 792.3
Lac12g2499 . 1 374 MAP Kinase Kinase Gene Family AT1G51660 69.1 1.1e-126 450.7
Lac10g0307 . 45 314 MAP Kinase Kinase Gene Family AT1G51660 55.6 5.9e-83 305.4
Lac12g2499 . 1 374 MAP Kinase Kinase Gene Family AT3G21220 67.7 4.8e-127 451.8
Lac10g0307 . 40 310 MAP Kinase Kinase Gene Family AT3G21220 55.4 1.0e-84 311.2
Lac6g3038 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 1.1e-171 600.1
Lac6g3082 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 57.3 1.4e-110 397.1
Lac3g1054 . 139 469 MAP Kinase Kinase Gene Family AT5G56580 56.8 1.9e-110 396.7
Lac10g0307 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 63.3 6.4e-107 384.8
Lac12g2499 . 76 339 MAP Kinase Kinase Gene Family AT1G18350 52.8 9.0e-77 284.6
Lac10g0307 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 51.6 3.1e-79 292.7
Lac10g0307 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.7 1.4e-114 410.2
Lac12g2499 . 80 339 MAP Kinase Kinase Gene Family AT1G73500 53.2 1.8e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86083 PF00069 Pkinase 2.80E-63 CL0016 Lac PK