Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1054 ATGCTTAAGTCAGCAAACGGAACGGTATGGAGTGAAAAAGTAAGAGCAAGAGGAGAGAGTAGAAAATATAGAATAGTGTTTAGGGATAGAATTCGGAGTCCCTTCTTCAGTGGTGAAGAGGGAGGGTATAAATACATGTTCATCCTCCTAGCGCTTTTAGGGTTTCAGAGGCGTTTTAGGTCAAACAAGGCAAAACCGGGGCTGATGGAGGCGGTAGGGCCTAACGGCATCGGACGGACTCGGCCTCGGCCCGAGCAGGGGGTCGGGCCAAAAACCCAAACCCTTCGGTCCTGGCCCGTCCCACTTGTCGGTTTTGCCTCCTTGGTCCATCTTTCAGCCCGATTTCTCCCCGGTTGTCCTCGGCTGCGGTCTGGAAGTGGAAGAGATCCGCCATCAATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTCCCTCAAGAAGATCAATCCATAGCCAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTGAACAGAGATGGGGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACTGATGATCAGTTGAGTTTAGCGGACATTGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTACAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATCGAGGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGTGGATCTTTAGCTGATTTTCTGAAAAAGGTGCTGAAGGGGTTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATCGTTGGAGAAAGATATGACAATAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTCGAATGTGCAACCGGAAAATTCCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAACCTCCTTCTGCTCCAGCCGACCAATTTACTCCCAACTTCTGTTCCTTCATTTCTGCATGTTTGCAAACGGACCCAAAGGATAGACTGTCTGCGCGTGAACTCTTGGAACATCCTTTCATCAAGATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1419 45.03 MLKSANGTVWSEKVRARGESRKYRIVFRDRIRSPFFSGEEGGYKYMFILLALLGFQRRFRSNKAKPGLMEAVGPNGIGRTRPRPEQGVGPKTQTLRSWPVPLVGFASLVHLSARFLPGCPRLRSGSGRDPPSMRKGGFSNNLNLKLNLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLQTDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8628359 8632807 - Lag0034582.1 Lac3g1054 601476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1054 472 ProSitePatterns Protein kinases ATP-binding region signature. 209 232 IPR017441 GO:0005524(InterPro)
Lac3g1054 472 ProSiteProfiles Protein kinase domain profile. 203 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1054 472 FunFam mitogen-activated protein kinase kinase 3 273 468 - -
Lac3g1054 472 Gene3D Phosphorylase Kinase; domain 1 179 281 - -
Lac3g1054 472 MobiDBLite consensus disorder prediction 70 93 - -
Lac3g1054 472 SMART serkin_6 203 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1054 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g1054 472 FunFam Mitogen-activated protein kinase kinase 6 173 282 - -
Lac3g1054 472 Pfam Protein kinase domain 205 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g1054 472 SUPERFAMILY Protein kinase-like (PK-like) 188 454 IPR011009 -
Lac3g1054 472 Gene3D Transferase(Phosphotransferase) domain 1 282 468 - -
Lac3g1054 472 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 147 467 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac3g1054 472 CDD PKc_MAPKK_plant_like 201 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1054 Lac-Chr3:8628359 Lac6g3082 Lac-Chr6:48366392 2.20E-143 dispersed
Lac3g1052 Lac-Chr3:8601265 Lac3g1054 Lac-Chr3:8628359 5.60E-13 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86083 PF00069 Pkinase 2.80E-63 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1054 K20603 - csv:101204545 652.899