Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g1058 | ATGAGTGGACCAGTTAACATTATTGTAGGTTCTCATGTCTGGATCGAAGATCCAAAACTAGCTTGGGTTGACGGTGAAGTTTTTCGCATCAATGGCGAGGAAGTTCACGTCCGTGCAACAAATGGGAAAACTGTTGTTACGAATATATCAAAAATATTCCCTAAGGATACTGAAGCACCTGCTGCAGGTGTTGATGACATGACAAAATTGTCATACTTGCATGAACCTGGAGTTCTGAGCAACTTGGCAACCAGATATGAGCTCAATGAAATCTATACATACACTGGAAATATACTTATTGCAATAAATCCATTCCAAAGATTACCCCATCTGTATGATACTCACATGATGGAACAATACAAAGGAGCTGGATTTGGAGAACTAAGTCCTCATGTCTTTGCAGTTGCTGAAGTGGCATATAGGGCAATGATTAATGAAGGAAAAAGCAATTCAATTCTAGTTAGTGGAGAAAGTGGTGCTGGTAAGACTGAGACCACGAAGATGCTCATGCGGTATCTTGCATACCTTGGAGGTCGATCTGGAGTGGAAGGGCGAACGGTTGAACAACAAGTCCTGGAATCCAATCCAGTTCTTGAAGCATTTGGCAATGCAAAAACTGTTAGGAACAATAATTCAAGTCGCTTTGGTAAATTCGTTGAGATCCAATTTGACAAGAGTGGGAGAATATCTGGGGCAGCTGTCCGAACTTATCTGCTTGAAAGGTCTCGAGTATGTCAGATCTCAGATCCTGAAAGAAACTATCATTGCTTTTACCTTCTCTGTGCAGCTCCTCCTGAGGAAAGGGAGAAGTATAAATTAGCAAACCCTAAATCATTCCACTACTTAAATCAATCTAACTGCTTTGAGTTGGATGGAGTGAACGATGCCCATGAATATCTTGCAACCAGAAGGGCTATGGATGTAGTTGGAATCAGCGAGGAGGAGCAGGAGGCAATTTTTAGGGTTGTAGCTGCAATTTTGCATCTTGGAAACATTGAATTTGCAAAGGGAGAGGAGATTGATTCTTCGGTCATTAAGGATGAAAAATCCAGATTCCATCTTAATACCACTGCCGAACTCCTCAAGTGTGATGCAAAGAGTTTGGAAGATGCACTGATTCAACGTGTTATGGTAACACCTGAAGAGGTTATAACTCGAACTCTTGATCCTGTGGCTGCATTGGGTAGTAGGGATGCCTTGGCTAAAACGATTTATTCACGGCTCTTTGACTGGCTCGTGGAGAAGATTAACAATTCAATTGGGCAAGACCCAAATTCTAAATCATTGATTGGAGTTCTGGATATATATGGATTTGAGAGTTTTAAATTCAACAGTTTCGAACAGTTCTGCATCAATTTTACAAATGAAAAACTGCAGCAACATTTCAATCAGCATGTTTTCAAAATGGAGCAGGAGGAATATACCAAAGAGCAAATCAATTGGAGTTATATTGAGTTTGTTGATAATCAGGATGTCTTGGATCTGATTGAAAAGAAACCTGGAGGAATTATCGCACTTCTGGATGAGGCCTGCATGTTTCCTAAATCTACACACGAAACATTTGCTCAGAAGTTGTACCAAACGTTCAAGAACAACAAGCGCTTCATTAAGCCTAAGCTATCTCGTACTAGTTTTACAATATCTCACTATGCTGGAGAGGTGACTTATTTGGCTGATCTATTCTTGGACAAAAACAAAGACTATGTGGTAGCAGAACATCAGGCCCTATTGACTGCCTCAAAATGCTCCTTTGCAAGAGCTCTATTTCCTCCTCAACCAGAGGAATCAGCAAAATCAAAATTTTCTTCCATTGGTTCACGTTTTAAATCACAACTTCAATCTTTAATGGAGACCTTAAATTCAACGGAACCTCACTACATCAGATGTGTGAAGCCAAATAATGCCCTCAAGCCTGCTATTTTTGAGAACTCAAATGTTATCCAACAATTACGTTGTGGTGGTGTTCTTGAAGCAATTAGGATCAGCTGTGCTGGATATCCTACGAGAAGAACATTTTATGAGTTCCTCCTACGTTTTGGGGTTCTTGCACCAGAAGTTTTAGATGGAAACTATGATGACAAGGTAGCATGCCAGATGATCCTGGATAAAATGGGATTGAAAGGTTATCAGATTGGTAAGACAAAAATCTTCCTGAGGGCTGGCCAGATGGCTTCTCTGGATGCAAAGAGAACAGAGGTGCTTAGCAATGCTGCCAGAACTATTCAAATGCAAATTCGAACATTCATTGCACGCAAAGAGTTTGTTGCATTACGTAAAGCTGCTATACAAGTGCAATCATTTACTCGAGGTGTATTGGCTCGAAAACTCTTTGAGCAGTTGCGGCGGGAAGCAGCAGCTTTAAACATCCAGAAGTGTTTCAAGAGATATATTGCCAGGAAATCATACTTAGATTTGCTCTCATCTGCAATCACATTGCAAACAGGGTTAAGAGCAATGAAGGCTCGTGATGAATTCAGATTTAGAAAGCGTACTAAGGCAGCAATTATCATTCAGGCACGTTTGCGTTGTCACTTGGCATATTCTTACTATACGAGACTCCAAAAGGCTGCATTGACCACACAGTGTGGTTGGAGGCGACGGGTTGCACGCAAGGAGCTAAGACAACTGAAAATGGCTGCAAGGGAAACCGGTGCACTCAAAGAAGCAAAAGACAAATTAGAAAAACGTGTAGAAGAACTTACATGGCGCTTGCAACTTGAGAAGCGGCTGAGGACTGATCTGGAAGAGGAGAAAGCCCAAGAACTTGCCAAATTACAAGATGCTTTACACAGTATGCAATTACAAGTTGAAGAAGCAAATGCTCAAGTTATCAAAGAGCGAGAGGCGGCTCGGAAAGCTATTGAAGAAGCACCTCCAGTGGTCAAGGAAACTCCAGTTTTTGTTGAGGATACTGAGAAAATCAATTCCTTAATGTCTGAGGTGGAAAATTTGAAGGCTTCGCTGCTGTCAGAAAAAAAGACAGCTGAAGAGGCTAAAATAGCTTGTGCAGATGCTGAAGCTAAAAATCTGGAGCTGGCTAAAAAACTTCAAGATGCAGACCAGAAGGTGGATCAACTTCAGGAGTCAATGCAGAGGCTTGAAGAAAAGCTTTCAAATTCAGAATCAGAGAACCAGGTACTTCGTCAGCAAGCCTTGACCATGTCACCAACAGGAAAAGCTTTATCTGCAAGGCCGAAGTCAATGATTATTCAGAGGACACCGGAGAATGGAAATATTCCACATGGAGAGGCCAAAGTATCATCGGATGCAGCTCTTGCATTATCAACTGTACGCGAGCCTGAATCAGAGGAAAAACCACAGAAATCACTTAATGAAAAGCAGCAGGAGAACCAGGACCTGCTAGTGAAGTGCATAACACAGGATTTGGGATTTTCTGGAGGCAAACCAGTTGCTGCTTGTGTCATATACAAATGTCTTCTTCACTGGCGGTCATTTGAAGTTGAAAGAACGAGCATATTCGATCGAATCATTCAAACAATAGCTTCATCCATAGAGGTCCAGGATAACAATGATGTATTAACTTATTGGTTATCTAATACATCCACATTGTTGTTGCTTCTTCAACACACTCTCAAAGCAAGTGGAGCTGCTAGCTTGACTCCTCAAAGGAGGAGAACTGCTTCAGCTTCTCTTTTTGGAAGGATGTCTCAAGGTTTAAGGGCATCTCCACAGAGTGCTGGACTATCATTTCTTAACAGTCGGGGGCTTGGTAGATTGGACGATTTTCGGCAGGTTGAGGCGAAGTATCCAGCACTACTATTTAAGCAGCAGCTTACAGCATTTTTGGAGAAAATATATGGAATGATAAGAGACAACCTAAAGAAAGAGATCTCGCCTTTACTTGGATTATGTATTCAGGCTCCTAGGACATCACGAGCAAGCTTAGTGAAAGGACGGTCCCAAGCTAATGCTATGGCTCAGCAAGCCTTAATTGCTCATTGGCAAAGCATTGTAAAAAGTTTAAACAATTATTTGAAGATCATGAAAGCAAACTATGTGCCTCCATTCTTAGTCCGCAAGGTCTACACTCAGATATTCTCATTTATTAATGTTCAACTATTTAACAGTCTTCTTTTGCGGCGTGAGTGTTGTTCATTCAGCAATGGAGAGTATGTGAAAGCTGGCTTGTCTGAATTAGAACAGTGGTGTTCTGGAGCAACTGAGGAATATGCAGGGTCTGCTTGGGATGAATTAAAGCATATTAGGCAGGCTGTTGGATTCCTTGTTATACATCAAAAACCCAAAAAGACTTTGAATGAGATAACTAAAGACCTATGTCCTGTGCTTAGCATACAACAGTTATATAGGATCAGTACAATGTACTGGGATGACAAATATGGCACACATAGTGTATCTTCAGAAGTTATTTCGAGTATGCGAATTCTGATGACTGAAGACTCCAACAATGCTATTAGCTCATTCCTGTTAGATGATGACTCTAGTATCCCATTTTCTGTGGATGATATTTCCAAATCAATGAAACAAGTAGATGTAACAGACATTGATCCTCCACCGCTGATACGAGAAAACTCCGGGTTCGGGTTTTTGCTTCAACGTGCAGAGTAA | 4587 | 41.18 | MSGPVNIIVGSHVWIEDPKLAWVDGEVFRINGEEVHVRATNGKTVVTNISKIFPKDTEAPAAGVDDMTKLSYLHEPGVLSNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAGFGELSPHVFAVAEVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEEREKYKLANPKSFHYLNQSNCFELDGVNDAHEYLATRRAMDVVGISEEEQEAIFRVVAAILHLGNIEFAKGEEIDSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQALLTASKCSFARALFPPQPEESAKSKFSSIGSRFKSQLQSLMETLNSTEPHYIRCVKPNNALKPAIFENSNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEVLDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAARTIQMQIRTFIARKEFVALRKAAIQVQSFTRGVLARKLFEQLRREAAALNIQKCFKRYIARKSYLDLLSSAITLQTGLRAMKARDEFRFRKRTKAAIIIQARLRCHLAYSYYTRLQKAALTTQCGWRRRVARKELRQLKMAARETGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEEEKAQELAKLQDALHSMQLQVEEANAQVIKEREAARKAIEEAPPVVKETPVFVEDTEKINSLMSEVENLKASLLSEKKTAEEAKIACADAEAKNLELAKKLQDADQKVDQLQESMQRLEEKLSNSESENQVLRQQALTMSPTGKALSARPKSMIIQRTPENGNIPHGEAKVSSDAALALSTVREPESEEKPQKSLNEKQQENQDLLVKCITQDLGFSGGKPVAACVIYKCLLHWRSFEVERTSIFDRIIQTIASSIEVQDNNDVLTYWLSNTSTLLLLLQHTLKASGAASLTPQRRRTASASLFGRMSQGLRASPQSAGLSFLNSRGLGRLDDFRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGRSQANAMAQQALIAHWQSIVKSLNNYLKIMKANYVPPFLVRKVYTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEQWCSGATEEYAGSAWDELKHIRQAVGFLVIHQKPKKTLNEITKDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRILMTEDSNNAISSFLLDDDSSIPFSVDDISKSMKQVDVTDIDPPPLIRENSGFGFLLQRAE | 1528 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 8663961 | 8679491 | + | Lag0034586.1 | Lac3g1058 | 601480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g1058 | 1528 | Gene3D | - | 666 | 729 | - | - | |
| Lac3g1058 | 1528 | Gene3D | Kinesin motor domain | 65 | 661 | IPR036961 | - | |
| Lac3g1058 | 1528 | FunFam | unconventional myosin-Va | 736 | 784 | - | - | |
| Lac3g1058 | 1528 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 33 | 784 | IPR027417 | - | |
| Lac3g1058 | 1528 | ProSiteProfiles | Myosin motor domain profile. | 62 | 731 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac3g1058 | 1528 | Gene3D | - | 252 | 310 | - | - | |
| Lac3g1058 | 1528 | Coils | Coil | 978 | 1050 | - | - | |
| Lac3g1058 | 1528 | ProSiteProfiles | IQ motif profile. | 757 | 786 | - | - | |
| Lac3g1058 | 1528 | ProSiteProfiles | IQ motif profile. | 782 | 811 | - | - | |
| Lac3g1058 | 1528 | Pfam | DIL domain | 1348 | 1451 | IPR002710 | - | |
| Lac3g1058 | 1528 | Gene3D | - | 784 | 831 | - | - | |
| Lac3g1058 | 1528 | Gene3D | - | 832 | 881 | - | - | |
| Lac3g1058 | 1528 | Gene3D | - | 732 | 783 | - | - | |
| Lac3g1058 | 1528 | Pfam | IQ calmodulin-binding motif | 758 | 777 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | Pfam | IQ calmodulin-binding motif | 736 | 754 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | Pfam | IQ calmodulin-binding motif | 855 | 874 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | Pfam | IQ calmodulin-binding motif | 831 | 850 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | Pfam | IQ calmodulin-binding motif | 784 | 802 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | CDD | MYSc_Myo11 | 76 | 719 | IPR036018 | - | |
| Lac3g1058 | 1528 | CDD | MyosinXI_CBD | 1112 | 1494 | IPR037975 | GO:0007015(InterPro) | |
| Lac3g1058 | 1528 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac3g1058 | 1528 | SMART | MYSc_2a | 56 | 732 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac3g1058 | 1528 | FunFam | unconventional myosin-Va | 785 | 832 | - | - | |
| Lac3g1058 | 1528 | ProSiteProfiles | Dilute domain profile. | 1161 | 1472 | IPR002710 | - | |
| Lac3g1058 | 1528 | FunFam | unconventional myosin-Va | 833 | 880 | - | - | |
| Lac3g1058 | 1528 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 784 | 882 | IPR027417 | - | |
| Lac3g1058 | 1528 | ProSiteProfiles | IQ motif profile. | 853 | 882 | - | - | |
| Lac3g1058 | 1528 | ProSiteProfiles | IQ motif profile. | 830 | 859 | - | - | |
| Lac3g1058 | 1528 | ProSiteProfiles | IQ motif profile. | 805 | 834 | - | - | |
| Lac3g1058 | 1528 | Pfam | Myosin N-terminal SH3-like domain | 9 | 51 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac3g1058 | 1528 | Coils | Coil | 876 | 956 | - | - | |
| Lac3g1058 | 1528 | Gene3D | - | 439 | 622 | - | - | |
| Lac3g1058 | 1528 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac3g1058 | 1528 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac3g1058 | 1528 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac3g1058 | 1528 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac3g1058 | 1528 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac3g1058 | 1528 | PANTHER | MYOSIN | 12 | 1470 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lac3g1058 | 1528 | SMART | iq_5 | 781 | 803 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | SMART | iq_5 | 829 | 851 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | SMART | iq_5 | 733 | 755 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | SMART | iq_5 | 756 | 778 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | SMART | iq_5 | 852 | 874 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | SMART | iq_5 | 804 | 826 | IPR000048 | GO:0005515(InterPro) | |
| Lac3g1058 | 1528 | ProSiteProfiles | IQ motif profile. | 734 | 763 | - | - | |
| Lac3g1058 | 1528 | FunFam | Myosin 2 | 312 | 426 | - | - | |
| Lac3g1058 | 1528 | FunFam | Myosin heavy chain | 252 | 307 | - | - | |
| Lac3g1058 | 1528 | SMART | DIL_2 | 1347 | 1454 | IPR002710 | - | |
| Lac3g1058 | 1528 | FunFam | Class V myosin | 439 | 582 | - | - | |
| Lac3g1058 | 1528 | Pfam | Myosin head (motor domain) | 64 | 719 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac3g1058 | 1528 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 600 | - | - | |
| Lac3g1058 | 1528 | FunFam | Myosin XI D | 666 | 729 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g1058 | Lac-Chr3:8663961 | Lac6g2827 | Lac-Chr6:45895318 | 0.00E+00 | dispersed | |
| Lac3g1058 | Lac-Chr3:8663961 | Lac4g0495 | Lac-Chr4:11472923 | 2.90E-19 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g1058 | K10357 | - | csv:101204300 | 2862.79 |