Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1058 ATGAGTGGACCAGTTAACATTATTGTAGGTTCTCATGTCTGGATCGAAGATCCAAAACTAGCTTGGGTTGACGGTGAAGTTTTTCGCATCAATGGCGAGGAAGTTCACGTCCGTGCAACAAATGGGAAAACTGTTGTTACGAATATATCAAAAATATTCCCTAAGGATACTGAAGCACCTGCTGCAGGTGTTGATGACATGACAAAATTGTCATACTTGCATGAACCTGGAGTTCTGAGCAACTTGGCAACCAGATATGAGCTCAATGAAATCTATACATACACTGGAAATATACTTATTGCAATAAATCCATTCCAAAGATTACCCCATCTGTATGATACTCACATGATGGAACAATACAAAGGAGCTGGATTTGGAGAACTAAGTCCTCATGTCTTTGCAGTTGCTGAAGTGGCATATAGGGCAATGATTAATGAAGGAAAAAGCAATTCAATTCTAGTTAGTGGAGAAAGTGGTGCTGGTAAGACTGAGACCACGAAGATGCTCATGCGGTATCTTGCATACCTTGGAGGTCGATCTGGAGTGGAAGGGCGAACGGTTGAACAACAAGTCCTGGAATCCAATCCAGTTCTTGAAGCATTTGGCAATGCAAAAACTGTTAGGAACAATAATTCAAGTCGCTTTGGTAAATTCGTTGAGATCCAATTTGACAAGAGTGGGAGAATATCTGGGGCAGCTGTCCGAACTTATCTGCTTGAAAGGTCTCGAGTATGTCAGATCTCAGATCCTGAAAGAAACTATCATTGCTTTTACCTTCTCTGTGCAGCTCCTCCTGAGGAAAGGGAGAAGTATAAATTAGCAAACCCTAAATCATTCCACTACTTAAATCAATCTAACTGCTTTGAGTTGGATGGAGTGAACGATGCCCATGAATATCTTGCAACCAGAAGGGCTATGGATGTAGTTGGAATCAGCGAGGAGGAGCAGGAGGCAATTTTTAGGGTTGTAGCTGCAATTTTGCATCTTGGAAACATTGAATTTGCAAAGGGAGAGGAGATTGATTCTTCGGTCATTAAGGATGAAAAATCCAGATTCCATCTTAATACCACTGCCGAACTCCTCAAGTGTGATGCAAAGAGTTTGGAAGATGCACTGATTCAACGTGTTATGGTAACACCTGAAGAGGTTATAACTCGAACTCTTGATCCTGTGGCTGCATTGGGTAGTAGGGATGCCTTGGCTAAAACGATTTATTCACGGCTCTTTGACTGGCTCGTGGAGAAGATTAACAATTCAATTGGGCAAGACCCAAATTCTAAATCATTGATTGGAGTTCTGGATATATATGGATTTGAGAGTTTTAAATTCAACAGTTTCGAACAGTTCTGCATCAATTTTACAAATGAAAAACTGCAGCAACATTTCAATCAGCATGTTTTCAAAATGGAGCAGGAGGAATATACCAAAGAGCAAATCAATTGGAGTTATATTGAGTTTGTTGATAATCAGGATGTCTTGGATCTGATTGAAAAGAAACCTGGAGGAATTATCGCACTTCTGGATGAGGCCTGCATGTTTCCTAAATCTACACACGAAACATTTGCTCAGAAGTTGTACCAAACGTTCAAGAACAACAAGCGCTTCATTAAGCCTAAGCTATCTCGTACTAGTTTTACAATATCTCACTATGCTGGAGAGGTGACTTATTTGGCTGATCTATTCTTGGACAAAAACAAAGACTATGTGGTAGCAGAACATCAGGCCCTATTGACTGCCTCAAAATGCTCCTTTGCAAGAGCTCTATTTCCTCCTCAACCAGAGGAATCAGCAAAATCAAAATTTTCTTCCATTGGTTCACGTTTTAAATCACAACTTCAATCTTTAATGGAGACCTTAAATTCAACGGAACCTCACTACATCAGATGTGTGAAGCCAAATAATGCCCTCAAGCCTGCTATTTTTGAGAACTCAAATGTTATCCAACAATTACGTTGTGGTGGTGTTCTTGAAGCAATTAGGATCAGCTGTGCTGGATATCCTACGAGAAGAACATTTTATGAGTTCCTCCTACGTTTTGGGGTTCTTGCACCAGAAGTTTTAGATGGAAACTATGATGACAAGGTAGCATGCCAGATGATCCTGGATAAAATGGGATTGAAAGGTTATCAGATTGGTAAGACAAAAATCTTCCTGAGGGCTGGCCAGATGGCTTCTCTGGATGCAAAGAGAACAGAGGTGCTTAGCAATGCTGCCAGAACTATTCAAATGCAAATTCGAACATTCATTGCACGCAAAGAGTTTGTTGCATTACGTAAAGCTGCTATACAAGTGCAATCATTTACTCGAGGTGTATTGGCTCGAAAACTCTTTGAGCAGTTGCGGCGGGAAGCAGCAGCTTTAAACATCCAGAAGTGTTTCAAGAGATATATTGCCAGGAAATCATACTTAGATTTGCTCTCATCTGCAATCACATTGCAAACAGGGTTAAGAGCAATGAAGGCTCGTGATGAATTCAGATTTAGAAAGCGTACTAAGGCAGCAATTATCATTCAGGCACGTTTGCGTTGTCACTTGGCATATTCTTACTATACGAGACTCCAAAAGGCTGCATTGACCACACAGTGTGGTTGGAGGCGACGGGTTGCACGCAAGGAGCTAAGACAACTGAAAATGGCTGCAAGGGAAACCGGTGCACTCAAAGAAGCAAAAGACAAATTAGAAAAACGTGTAGAAGAACTTACATGGCGCTTGCAACTTGAGAAGCGGCTGAGGACTGATCTGGAAGAGGAGAAAGCCCAAGAACTTGCCAAATTACAAGATGCTTTACACAGTATGCAATTACAAGTTGAAGAAGCAAATGCTCAAGTTATCAAAGAGCGAGAGGCGGCTCGGAAAGCTATTGAAGAAGCACCTCCAGTGGTCAAGGAAACTCCAGTTTTTGTTGAGGATACTGAGAAAATCAATTCCTTAATGTCTGAGGTGGAAAATTTGAAGGCTTCGCTGCTGTCAGAAAAAAAGACAGCTGAAGAGGCTAAAATAGCTTGTGCAGATGCTGAAGCTAAAAATCTGGAGCTGGCTAAAAAACTTCAAGATGCAGACCAGAAGGTGGATCAACTTCAGGAGTCAATGCAGAGGCTTGAAGAAAAGCTTTCAAATTCAGAATCAGAGAACCAGGTACTTCGTCAGCAAGCCTTGACCATGTCACCAACAGGAAAAGCTTTATCTGCAAGGCCGAAGTCAATGATTATTCAGAGGACACCGGAGAATGGAAATATTCCACATGGAGAGGCCAAAGTATCATCGGATGCAGCTCTTGCATTATCAACTGTACGCGAGCCTGAATCAGAGGAAAAACCACAGAAATCACTTAATGAAAAGCAGCAGGAGAACCAGGACCTGCTAGTGAAGTGCATAACACAGGATTTGGGATTTTCTGGAGGCAAACCAGTTGCTGCTTGTGTCATATACAAATGTCTTCTTCACTGGCGGTCATTTGAAGTTGAAAGAACGAGCATATTCGATCGAATCATTCAAACAATAGCTTCATCCATAGAGGTCCAGGATAACAATGATGTATTAACTTATTGGTTATCTAATACATCCACATTGTTGTTGCTTCTTCAACACACTCTCAAAGCAAGTGGAGCTGCTAGCTTGACTCCTCAAAGGAGGAGAACTGCTTCAGCTTCTCTTTTTGGAAGGATGTCTCAAGGTTTAAGGGCATCTCCACAGAGTGCTGGACTATCATTTCTTAACAGTCGGGGGCTTGGTAGATTGGACGATTTTCGGCAGGTTGAGGCGAAGTATCCAGCACTACTATTTAAGCAGCAGCTTACAGCATTTTTGGAGAAAATATATGGAATGATAAGAGACAACCTAAAGAAAGAGATCTCGCCTTTACTTGGATTATGTATTCAGGCTCCTAGGACATCACGAGCAAGCTTAGTGAAAGGACGGTCCCAAGCTAATGCTATGGCTCAGCAAGCCTTAATTGCTCATTGGCAAAGCATTGTAAAAAGTTTAAACAATTATTTGAAGATCATGAAAGCAAACTATGTGCCTCCATTCTTAGTCCGCAAGGTCTACACTCAGATATTCTCATTTATTAATGTTCAACTATTTAACAGTCTTCTTTTGCGGCGTGAGTGTTGTTCATTCAGCAATGGAGAGTATGTGAAAGCTGGCTTGTCTGAATTAGAACAGTGGTGTTCTGGAGCAACTGAGGAATATGCAGGGTCTGCTTGGGATGAATTAAAGCATATTAGGCAGGCTGTTGGATTCCTTGTTATACATCAAAAACCCAAAAAGACTTTGAATGAGATAACTAAAGACCTATGTCCTGTGCTTAGCATACAACAGTTATATAGGATCAGTACAATGTACTGGGATGACAAATATGGCACACATAGTGTATCTTCAGAAGTTATTTCGAGTATGCGAATTCTGATGACTGAAGACTCCAACAATGCTATTAGCTCATTCCTGTTAGATGATGACTCTAGTATCCCATTTTCTGTGGATGATATTTCCAAATCAATGAAACAAGTAGATGTAACAGACATTGATCCTCCACCGCTGATACGAGAAAACTCCGGGTTCGGGTTTTTGCTTCAACGTGCAGAGTAA 4587 41.18 MSGPVNIIVGSHVWIEDPKLAWVDGEVFRINGEEVHVRATNGKTVVTNISKIFPKDTEAPAAGVDDMTKLSYLHEPGVLSNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAGFGELSPHVFAVAEVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEEREKYKLANPKSFHYLNQSNCFELDGVNDAHEYLATRRAMDVVGISEEEQEAIFRVVAAILHLGNIEFAKGEEIDSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQALLTASKCSFARALFPPQPEESAKSKFSSIGSRFKSQLQSLMETLNSTEPHYIRCVKPNNALKPAIFENSNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEVLDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAARTIQMQIRTFIARKEFVALRKAAIQVQSFTRGVLARKLFEQLRREAAALNIQKCFKRYIARKSYLDLLSSAITLQTGLRAMKARDEFRFRKRTKAAIIIQARLRCHLAYSYYTRLQKAALTTQCGWRRRVARKELRQLKMAARETGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEEEKAQELAKLQDALHSMQLQVEEANAQVIKEREAARKAIEEAPPVVKETPVFVEDTEKINSLMSEVENLKASLLSEKKTAEEAKIACADAEAKNLELAKKLQDADQKVDQLQESMQRLEEKLSNSESENQVLRQQALTMSPTGKALSARPKSMIIQRTPENGNIPHGEAKVSSDAALALSTVREPESEEKPQKSLNEKQQENQDLLVKCITQDLGFSGGKPVAACVIYKCLLHWRSFEVERTSIFDRIIQTIASSIEVQDNNDVLTYWLSNTSTLLLLLQHTLKASGAASLTPQRRRTASASLFGRMSQGLRASPQSAGLSFLNSRGLGRLDDFRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGRSQANAMAQQALIAHWQSIVKSLNNYLKIMKANYVPPFLVRKVYTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEQWCSGATEEYAGSAWDELKHIRQAVGFLVIHQKPKKTLNEITKDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRILMTEDSNNAISSFLLDDDSSIPFSVDDISKSMKQVDVTDIDPPPLIRENSGFGFLLQRAE 1528
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 8663961 8679491 + Lag0034586.1 Lac3g1058 601480
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1058 1528 Gene3D - 666 729 - -
Lac3g1058 1528 Gene3D Kinesin motor domain 65 661 IPR036961 -
Lac3g1058 1528 FunFam unconventional myosin-Va 736 784 - -
Lac3g1058 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 784 IPR027417 -
Lac3g1058 1528 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lac3g1058 1528 Gene3D - 252 310 - -
Lac3g1058 1528 Coils Coil 978 1050 - -
Lac3g1058 1528 ProSiteProfiles IQ motif profile. 757 786 - -
Lac3g1058 1528 ProSiteProfiles IQ motif profile. 782 811 - -
Lac3g1058 1528 Pfam DIL domain 1348 1451 IPR002710 -
Lac3g1058 1528 Gene3D - 784 831 - -
Lac3g1058 1528 Gene3D - 832 881 - -
Lac3g1058 1528 Gene3D - 732 783 - -
Lac3g1058 1528 Pfam IQ calmodulin-binding motif 758 777 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 Pfam IQ calmodulin-binding motif 736 754 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 Pfam IQ calmodulin-binding motif 831 850 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 Pfam IQ calmodulin-binding motif 784 802 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 CDD MYSc_Myo11 76 719 IPR036018 -
Lac3g1058 1528 CDD MyosinXI_CBD 1112 1494 IPR037975 GO:0007015(InterPro)
Lac3g1058 1528 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lac3g1058 1528 SMART MYSc_2a 56 732 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lac3g1058 1528 FunFam unconventional myosin-Va 785 832 - -
Lac3g1058 1528 ProSiteProfiles Dilute domain profile. 1161 1472 IPR002710 -
Lac3g1058 1528 FunFam unconventional myosin-Va 833 880 - -
Lac3g1058 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 882 IPR027417 -
Lac3g1058 1528 ProSiteProfiles IQ motif profile. 853 882 - -
Lac3g1058 1528 ProSiteProfiles IQ motif profile. 830 859 - -
Lac3g1058 1528 ProSiteProfiles IQ motif profile. 805 834 - -
Lac3g1058 1528 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lac3g1058 1528 Coils Coil 876 956 - -
Lac3g1058 1528 Gene3D - 439 622 - -
Lac3g1058 1528 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lac3g1058 1528 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lac3g1058 1528 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lac3g1058 1528 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lac3g1058 1528 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lac3g1058 1528 PANTHER MYOSIN 12 1470 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Lac3g1058 1528 SMART iq_5 781 803 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 SMART iq_5 829 851 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 SMART iq_5 733 755 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 SMART iq_5 756 778 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 SMART iq_5 852 874 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 SMART iq_5 804 826 IPR000048 GO:0005515(InterPro)
Lac3g1058 1528 ProSiteProfiles IQ motif profile. 734 763 - -
Lac3g1058 1528 FunFam Myosin 2 312 426 - -
Lac3g1058 1528 FunFam Myosin heavy chain 252 307 - -
Lac3g1058 1528 SMART DIL_2 1347 1454 IPR002710 -
Lac3g1058 1528 FunFam Class V myosin 439 582 - -
Lac3g1058 1528 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lac3g1058 1528 Gene3D Myosin VI head, motor domain, U50 subdomain 312 600 - -
Lac3g1058 1528 FunFam Myosin XI D 666 729 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1058 Lac-Chr3:8663961 Lac6g2827 Lac-Chr6:45895318 0.00E+00 dispersed
Lac3g1058 Lac-Chr3:8663961 Lac4g0495 Lac-Chr4:11472923 2.90E-19 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1058 K10357 - csv:101204300 2862.79