Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1061 ATGGCCAACTCTGGATTTTTCTGCTCCTCAACTCTCTTAGAAACTGACTCTGTTCCTCAACCAAAATCCTTTTCCTCTGTTTCGGCCTCCGACCATTGGGTCAAGGCTGCCAACGCTCTCAGCCACACCCATTTTGAGGAGGTTTGTCGCATGGTGTCGGAGTTTCAAGAGGCTCAAACTGTTGACATCGAAGGCACCACCCTCACTGTTGCTCAGGTCACCGCCATTGCTCGTCGCAGCGACGTCAAAGTTAACCTGAACAAAGCCGTGGCCCATGATCGTGTGGCCAAAAGTGCAAATTGGGTTGCTGAGAAAATCTCTCGTGGGATCGATGTATATGGAGTTACCACTGGCTTTGGCGCCACCTCCCACAGGCGTACGACCAAGACAGCCGATCTCCAGACAGAGCTCATCAGGTTCCTCAACGCCGGAGTCATTGGAAAGGACAGTCTTCCATCTAGCTACTCAAAGGCAGCCATGCTTGTTAGAACAAACACATTGATGCAAGGCTACTCGGGCATTCGTTGGGAAATTCTTGAAGCTGTGGTGAAGCTCATGAATCAGAATTTGATCCCTAAATTGCCTTTGAGAGGGACGATCACAGCTTCAGGTGATCTTGTTCCACTGTCTTATATTGCTGGCGTTGTCACTGGAAGGCATAATTCCAAGGTTACCACCATGGAAGGCGAAGAGATCACCGCCATGGAAGCTCTAAAGAGAGCTGGAATTGCAGGCCCATTTGAGCTTCAAGCAAAGGAAGGCTTAGCTCTTGTCAATGGAACCGCCGTCGGATCAGCCGTCGCCGCCACAGTCTGCTATGATGCCAATATTTTGGCTCTTTTAGCCGTCGTTCTCTCTGCTTTGTTCTGTGAGGCCATGCTCGGCAAGCCAGAATTTGCAGACCCATTGACCCATAAGCTCAAGCACCACCCGGGCCAGATTGAATCAGCCGCAGCCATGGAGTTTCTCTTGGACCAAAGCGACTATATGAAAGAAGCAAAAATCCGCCATGAAAATGACCCATTGACAAAGCCAAAACAAGACCGCTATGCACTTCGAACTTCTCCTCAATGGCTCGGGCCCCAAATCGAAGTCATTCGAACGGCCACCCATTCGATCGAAAGGGAAATCAACTCTGTAAATGATAACCCACTAATCGACGTCAATCGGGACCTAGCTCTACATGGAGGAAACTTTCAGGGAACACCAATCGGCGTCTCCATGGATAATCTTCGAATCGCCATCGCTGCAATTGGAAAACTGATGTTCGCCCAATTCTCTGAGCTTGTCTGCGATCATTACAACAATGGATTGCCATCTAATCTGAGCGGCGGGCCAAACCCTAGCTTGGATTACGGCTTAAAAGGGGCGGAAATCGCCATGGCTGCTTATTGCTCCGAGCTCCAATACTTGGCAAACCCTGTCACGACCCATGTCCAGAGTGCAGAGCAACACAATCAAGACGTAAACTCTCTAGGTCTAATCTCGGCCAGAAAATCCGCCGAAGCCATTGAAATTCTCAAGCTCATGTCAGCTACATACATGGTGGCGCTCTGCCAGGCGATCGATTTAAGGCAATACGAAGAAAACATGAGGGAAGTTGTGAAAAACGCGCTTCTACAAACCGTAAGAAGAACCCTATATGTTGCAGAGTACGGATCGCTTCTCGAATCACGATTCTGCGAGAAAGATCTCCTGCAAGTAATCGAGCGCGAGCCAGTCTTCTCCTACATCGACGATCCCGCCAACACTTCCTACGCCTTAATCCCTAAATTACTGGAAGTTGTAGTGGAAAGAGCGTTGAAAGGCGTTGCAGCAGCGAAAAACGAGAATGGAGAGGAAACAGGAATCGCCATTTTCAAGCAAATCCCAGGGTTTCTAGAGGAATTAAAGGCGAAACTGGAAAAAGATGTTGAAACTGCGAGAGGGAGATTCGAGAATGGTGATTTCGCAGTGGAAAACAGAATCAAGAAATGCAGCACTTACCCGATCTACCGCTTTGTGAGGACTGAAGTGGGAACTCAACTGCTCAGTGGGGCGAAGAAGGTGAGCCCTGGAGAAGATATTGAGAAAGTGGTGGAAGCCATTAATGAAGGGAAGCTTGGAGATGTTCTGATCAACTGTTTGAAGAATTAG 2136 48.78 MANSGFFCSSTLLETDSVPQPKSFSSVSASDHWVKAANALSHTHFEEVCRMVSEFQEAQTVDIEGTTLTVAQVTAIARRSDVKVNLNKAVAHDRVAKSANWVAEKISRGIDVYGVTTGFGATSHRRTTKTADLQTELIRFLNAGVIGKDSLPSSYSKAAMLVRTNTLMQGYSGIRWEILEAVVKLMNQNLIPKLPLRGTITASGDLVPLSYIAGVVTGRHNSKVTTMEGEEITAMEALKRAGIAGPFELQAKEGLALVNGTAVGSAVAATVCYDANILALLAVVLSALFCEAMLGKPEFADPLTHKLKHHPGQIESAAAMEFLLDQSDYMKEAKIRHENDPLTKPKQDRYALRTSPQWLGPQIEVIRTATHSIEREINSVNDNPLIDVNRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDHYNNGLPSNLSGGPNPSLDYGLKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAIEILKLMSATYMVALCQAIDLRQYEENMREVVKNALLQTVRRTLYVAEYGSLLESRFCEKDLLQVIEREPVFSYIDDPANTSYALIPKLLEVVVERALKGVAAAKNENGEETGIAIFKQIPGFLEELKAKLEKDVETARGRFENGDFAVENRIKKCSTYPIYRFVRTEVGTQLLSGAKKVSPGEDIEKVVEAINEGKLGDVLINCLKN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8697552 8699687 - Lag0034589.1 Lac3g1061 601483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1061 711 Gene3D - 22 261 IPR024083 -
Lac3g1061 711 NCBIfam phenylalanine ammonia-lyase 31 710 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac3g1061 711 Gene3D - 528 654 IPR023144 -
Lac3g1061 711 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Lac3g1061 711 PANTHER HISTIDINE AMMONIA-LYASE 27 711 IPR001106 GO:0016841(PANTHER)
Lac3g1061 711 CDD PAL-HAL 66 525 IPR001106 -
Lac3g1061 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Lac3g1061 711 SUPERFAMILY L-aspartase-like 32 710 IPR008948 GO:0003824(InterPro)
Lac3g1061 711 Pfam Aromatic amino acid lyase 68 541 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1061 Lac-Chr3:8697552 Lac8g2407 Lac-Chr8:42161594 1.20E-238 dispersed
Lac3g1061 Lac-Chr3:8697552 Lac1g2141 Lac-Chr1:42845941 7.30E-239 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1061 K10775 - csv:101205510 1236.86