Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1066 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTCTGCGGATTTTGGATAGTGAAGGAGCAGTTGATGCTGGTAAAGATGTCACTAAATGTTCTGTTGCTTCTTTTGCTGATATTGATCTAAAAGAAACTCGGAGTTTTAGGTGCACAATTCCGCAATCTGTGGTTGGGAGCTCTCCTTCACACGAGATTGCTAGAATGAGTCCCCTTAAACCTCCAAAAATTCCAGTCGAATCGGCAGTTCGGCGGCCATCGTTTACTCGTTCTTCGTTTTCGAAGCCGAAATCAAGGCTAGTAGAGCCACCTTGTCCTGATGGTGTGAGTTTGGCAGAAGAAAAGACTCAAGCAAAATCAACATCTGGTTCACAATTCTATAGCTCTCCGATGACGGATTCCCCAGCTAAGATACCTACTGCGACTAGTCCTCGAGATGCTCTTAAGTCGGCCCCAATAACTCCAAAGACGCCATTGATTGGATCTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTGAAAAGGACCATTTTAATCGAATGGGTTGCATTTTTGTGCTTAACAGGGTGTTTGATTGCTAGCTTAACACTAGACAAGTTGGTGACTAAAGAGATCTGGGGATTAGGACTGTGGAAGTGGTGTGTTCTGGTATTAGTTATTTTCTGTGGTCGATTATTTTCGCAATGGTTTATCAACTGCCTGGTTTTCTTGATTGAAAGAAACTTTCTACTCAAAAGAAAGGTTCTATATTTTGTCTTTGGGCTGAGGAAGAGTGTTATAATTTTTATATGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAATGAAATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTCATCGGAGCAGGATTGTGGCTGGTGAAAACTTTGTTGGTGAAGATACTGGCTGCTTCTTTTCAATGTGCTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAGTATATCCTGCGCACTCTATCAGGACCTCCGCTGATGGAAATGGCTGAAAGAATTGGGAGAGCAGCAAGCACGGGGCAGTTGAGTTTTAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAGCTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGAGTGAACAAAAGGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAAATTTTCAGGAACGTGGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTATCGTTTTATGAGCAAGGAGGAAGTTGATAATGTGCTGCCATTGTTTGAAGGAGCAGTTGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAGTGTTTATGTCGAACGCAAGTCACTAGCCCACTCATTGAATGACACCAAGACTGCAATAGAGGAGCTAAACAAGCTTGCTTCTGCAATTGTACTGATTGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTGACGACTCAAGTACTCGTCTTCATTTCATCACAGCTTCTGCTAGTGGTTTTCATGTTTGGCAACACTGCCAGAACTGTATTTGAAGCCATCATATTCGTATTTGTGATGCATCCATTCGACGTGGGGGATCGTTGTGTTGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTCCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGCGATTCGATCGAATTCTCTGTCGACTTTTCCACGTCAATTGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACTTAGAAAGCAAACCTCAGTTCTGGCGTCCGAACCACAGTGTGCTGGTGAAGGAGATCGAAAATGTCAACAAGATGAAACTGGGTCTGTACGTGAATCACACCATAAACTTTCAGAACTATGGCGACAAGAGCAGCCGCAGATCGGAGCTCGTCTTGGAGCTGAAGAAAATTTTCGAAGATCTCAGCATCAAGTATCATCTGCTACCTCAAGAAGTGCAGCTCAACTATGTGAGTTCAGCAGCTCCTATGGTTCCATCCTCGCGGAGATAA 2310 42.47 MADKKGTEQVVLRILDSEGAVDAGKDVTKCSVASFADIDLKETRSFRCTIPQSVVGSSPSHEIARMSPLKPPKIPVESAVRRPSFTRSSFSKPKSRLVEPPCPDGVSLAEEKTQAKSTSGSQFYSSPMTDSPAKIPTATSPRDALKSAPITPKTPLIGSTGSEEEDDEEVYKTAELKVKERSGKKLKRTILIEWVAFLCLTGCLIASLTLDKLVTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVFGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKILAASFQCARFFDRIQESIFHQYILRTLSGPPLMEMAERIGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEESEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLYRFMSKEEVDNVLPLFEGAVETGKIKRKTLKNWLVSVYVERKSLAHSLNDTKTAIEELNKLASAIVLIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIEFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVLVKEIENVNKMKLGLYVNHTINFQNYGDKSSRRSELVLELKKIFEDLSIKYHLLPQEVQLNYVSSAAPMVPSSRR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8737565 8740405 + Lag0034594.1 Lac3g1066 601488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1066 769 MobiDBLite consensus disorder prediction 52 150 - -
Lac3g1066 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 68 759 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Lac3g1066 769 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Lac3g1066 769 PIRSF Memb_At2g17000 35 768 IPR016688 -
Lac3g1066 769 Gene3D - 598 647 IPR023408 -
Lac3g1066 769 FunFam Predicted mechanosensitive ion channel 598 647 - -
Lac3g1066 769 Pfam Mechanosensitive ion channel, beta-domain 591 647 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac3g1066 769 MobiDBLite consensus disorder prediction 111 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0489 Lac-Chr2:3566675 Lac3g1066 Lac-Chr3:8737565 3.70E-160 dispersed
Lac12g1978 Lac-Chr12:36681796 Lac3g1066 Lac-Chr3:8737565 1.60E-146 transposed
Lac2g0114 Lac-Chr2:874236 Lac3g1066 Lac-Chr3:8737565 1.80E-117 transposed
Lac4g1220 Lac-Chr4:29814812 Lac3g1066 Lac-Chr3:8737565 1.10E-128 transposed
Lac9g1858 Lac-Chr9:38358597 Lac3g1066 Lac-Chr3:8737565 8.30E-150 transposed
Lac2g0488 Lac-Chr2:3556662 Lac3g1066 Lac-Chr3:8737565 3.10E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1066 K22048 - csv:101209209 1309.28