Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1074 ATGAGCGCCAGAAGTATGTTTCCCTTCACCTCAGCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATCCCTATACCTCCTGATCTCCTCTTCAGTATTAAAAGAAGTACCTTGGACTCTCCTTTCACTTCTAAGCTCTTCCCCCACCACCCTCAACATGTTGGATGGAACTATTTACAGATGAGTTTGGGGAGGAAGATAGACCCAGAACCAGGGAGGTGCAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAGGCATATCCAGATTCGAAATACTGTGAGAGGCACATGCATAGAGGCAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAATGACATAAACCATCTCTCAAATCCAGCATTTTCTTCACTGACCAATAACTCGTCCTTACTCTCCTATCGGCCCTTCCCCGCTCATCTAATATCTTCAACTCCTAATGGGAATGGCATATCAACCCAAGACACTAATACCCTCTTGCTTCTGGAATCTGGTTCTTACTCGGACAGAAACCCAGATTACAGAAGTAGGTACACTTATGGGCTAAAAGAGGAAGTGGATGAGCATGTTTTCTTCTCACAAGAACCATCTGAAACTACTGCCAGGGCTGATTTCTCTGCTTCGTCCATAACTGATCCTCTGCAATTGACGCCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAACAACTGCTCATCTTTGCAGAGTGATCAGTCTTGCTATCAGCTTCATCAGAGCCTCACAGACCCTTTGAAGCAACAAAAGCGAGACGAATCACCGAAGACAGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAGAGAGGATCATGGCTTGATTTTGAGGATAAATCGTCAAATACTGGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACTGCTTCCAATGACTTCCCCATTTTCAGATCCAAAAATCCATAA 999 44.24 MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSIKRSTLDSPFTSKLFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINHLSNPAFSSLTNNSSLLSYRPFPAHLISSTPNGNGISTQDTNTLLLLESGSYSDRNPDYRSRYTYGLKEEVDEHVFFSQEPSETTARADFSASSITDPLQLTPLTMSCSSLYPKQNNCSSLQSDQSCYQLHQSLTDPLKQQKRDESPKTVHRFFDEWPPKERGSWLDFEDKSSNTGSVSTTRLSISIPTASNDFPIFRSKNP 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8806355 8807534 - Lag0034602.1 Lac3g1074 601496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1074 332 PANTHER GROWTH-REGULATING FACTOR 5 2 319 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Lac3g1074 332 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac3g1074 332 Pfam WRC 77 118 IPR014977 -
Lac3g1074 332 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac3g1074 332 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Lac3g1074 332 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2484 Lac-Chr12:41899517 Lac3g1074 Lac-Chr3:8806355 2.20E-47 dispersed
Lac1g2704 Lac-Chr1:48252080 Lac3g1074 Lac-Chr3:8806355 2.40E-30 dispersed
Lac3g1074 Lac-Chr3:8806355 Lac9g1392 Lac-Chr9:31576486 1.60E-34 dispersed
Lac10g2895 Lac-Chr10:43538595 Lac3g1074 Lac-Chr3:8806355 1.20E-28 transposed
Lac3g1074 Lac-Chr3:8806355 Lac6g3101 Lac-Chr6:48463371 2.50E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23629 PF08879 WRC 1.10E-20 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1074 - - - 0.0