Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1097 ATGGCTTTGGATTCGAGCAATGGCGGTGAAGTCGGAGCGGATAACTCTCTCCAGTCCATCTGTTACAAGCGCGGGTCCTTGCGGCTGCTCGATCAGAGGAAGCTCCCTCTGGAGACTGTTTACCTGGACATCAAGGATGCAACAGATGGATGGCATGCAATAAGGGATATGGTTGTACGTGGTGCACCGGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAAGTGTACAACTCAAATGCTTTCAATGGGACGTGCAATGACGCAGCTTCCTTCATTGCAGAGAAACTGGACTACTTAGTCTCCAGCCGACCAACTGCTGTTAATCTTGGCGATGCTGCTATTAAACTTAAAGAAATTGTCTCTGAGGCTGCTGCTATTTCTTCTGAAGCCAAGAGTGTTGTCCAAGCGTATATAGAGGCTGCCGAAGCAATGCTGGAGGATGACGTTGCTTCAAATAAAGCCATTGGGTCCTATGGAGCAACTTATATCCGCGATCAACAAAAATCCTTGGAGAAGTTTTCCGTTCTAACGCATTGCAATACTGGCAGTCTAGCAACGGCTGGATATGGTACTGCCCTTGGTGTAATTCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACCGAAACACGGCCTTTTAATCAAGGATCCCGACTCACGGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTGATAGCAGATTCTGCTGCCGCCGCCTTGATGAAATTTGAAAGGGTGAATGCTGTTGTAGTTGGGGCTGATCGCATAGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAAGATTCCATTCTTTGTGGCTGCACCATTGACTTCCATAGACTTATCCCTTTCTTCTGGAGAAGAAATTGTCATCGAGGAAAGGTCTCCCAAAGAGTTGTTGAACTCACGTGGAGGTCTCGGTGAGCAAGTCGCTGCATCTGGCATCGCTGTCTGGAACCCTGCTTTCGATGTTACTCCTGCTTATCTCATCGCAGGGATCATAACAGAAAAGGGAGTCATCACGAAGGCAGGTTCTGAATCTTTCAATATAAAGGAGTTCGTTCAAAAGACGGCAGGGACTCCTGCATAG 1146 47.47 MALDSSNGGEVGADNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAAEVYNSNAFNGTCNDAASFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSEAAAISSEAKSVVQAYIEAAEAMLEDDVASNKAIGSYGATYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFERVNAVVVGADRIAANGDTANKIGTYSLALCAMHHKIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPAYLIAGIITEKGVITKAGSESFNIKEFVQKTAGTPA 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9019970 9022959 - Lag0034625.1 Lac3g1097 601519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1097 381 Gene3D - 208 373 IPR042529 -
Lac3g1097 381 Gene3D - 15 207 IPR027363 -
Lac3g1097 381 FunFam Methylthioribose-1-phosphate isomerase 15 207 - -
Lac3g1097 381 FunFam Methylthioribose-1-phosphate isomerase 173 370 - -
Lac3g1097 381 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 14 376 - GO:0019509(PANTHER)|GO:0046523(PANTHER)
Lac3g1097 381 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 18 361 IPR005251 -
Lac3g1097 381 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 17 370 IPR005251 -
Lac3g1097 381 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 44 361 IPR011559 GO:0044249(InterPro)
Lac3g1097 381 SUPERFAMILY NagB/RpiA/CoA transferase-like 17 362 IPR037171 -
Lac3g1097 381 Pfam Initiation factor 2 subunit family 59 360 IPR000649 GO:0044237(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1097 Lac-Chr3:9019970 Lac4g2275 Lac-Chr4:42415646 6.90E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1097 K08963 - csv:101210526 669.077