Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1109 ATGACGAAGCCCTCCTCCCCTCAGAAATCCGCCGCCGTCGACACCAGCGATTCCCGCTACAAGGGGGTGCGCCGGCGGAAGTGGGGCAAGTGGGTCTCCGAGATCCGCCTCCCCAACAGCCGCGAGCGGATCTGGCTCGGCTCCTACGATTCCGCCGAGAAGGCGGCGCGTGCCTTCGACGCGGCTCTCTTTTGCCTACGTGGCCGCTCGGCTCGCTTCAATTTCCCCGACAACCCCCCGGAGATCGCCGGCGCCAGCTTACTCTCCCGCGCCGAGATTCAGTCCGTCGCCGCCCAGTTCGCCAACTCCGACCCAACTCCCTCGTCGGAATACACCCGACCCACCACCGATTCCCCGATGAACTCTCCGTCGCCGTCGGCGACCACCGCCGTTACCGAGTGTGATGAAAGATCGTCGTTTTTGTTGGATCTTCACACCGACATAGGAGCCGAGAATTACGGGTCGGATTTCGGGTTGTTTAATGAGTACAACCCGTTTTACAACGAATTGTTCAGTTCTTCTGCAACTCCTTCTTTTGATTATGGAGATGAGAATTTTGACGCCATGACCACTCATCAGGATTCATTTCTCTGGAATTTCTGA 603 58.21 MTKPSSPQKSAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRAEIQSVAAQFANSDPTPSSEYTRPTTDSPMNSPSPSATTAVTECDERSSFLLDLHTDIGAENYGSDFGLFNEYNPFYNELFSSSATPSFDYGDENFDAMTTHQDSFLWNF 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9124815 9125417 - Lag0034637.1 Lac3g1109 601531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1109 200 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1109 200 MobiDBLite consensus disorder prediction 1 21 - -
Lac3g1109 200 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677(InterPro)
Lac3g1109 200 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1109 200 MobiDBLite consensus disorder prediction 100 129 - -
Lac3g1109 200 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1109 200 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1109 200 MobiDBLite consensus disorder prediction 1 15 - -
Lac3g1109 200 Pfam AP2 domain 18 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1109 200 SMART rav1_2 19 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1109 200 CDD AP2 18 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1109 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 137 IPR051032 -
Lac3g1109 200 FunFam Ethylene-responsive transcription factor 2 18 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1109 Lac-Chr3:9124815 Lac6g0131 Lac-Chr6:1095095 2.50E-35 dispersed
Lac2g0506 Lac-Chr2:3731898 Lac3g1109 Lac-Chr3:9124815 7.50E-32 wgd
Lac3g1109 Lac-Chr3:9124815 Lac4g3058 Lac-Chr4:48723681 2.20E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23632 PF00847 AP2 7.70E-13 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1109 - - - 0.0