Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1219 ATGGGTGACCTCGAAACTCAAAGAATTAGAAACATATGTATATTGGCACACGTTGACCATGGCAAAACAACACTTGCTGACCATCTTATTGCCGCCTCGGGGGGTGGTTTGATTCACCCGAAGATGGCGGGCCGCCTCCGTTTCATGGATTATCTTGACGAGGAACAAAGGCGTGCGATTACCATGAAGAGCTCCTCGATTGGTCTACGGTACAAGGAATACTCTATAAACCTCATTGATTCGCCTGGCCATATGGATTTTTGTAGTGAAGTGTCGACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTGGTTGATGCCGTGGAGGGTGTGCACATTCAAACCCATGCCGTTTTGCGACAGGCTTGGATTGAGAAACTTACACCGTGTTTGGTTCTTAATAAGATTGATAGGTTGATATGTGAGTTGAAGTTGAGTCCTATGGAAGCGTATACTCGTTTGTTGAGGATTGTTCATGAAGTTAATGGGATAATGAGTGCGTATAAGTCTGAGAAATATCTGTCTGATGTGGATTCTATACTCGCAGGTTCTTCAGGTGAGGTAAACGATGAGAATCTTGAGTTTATTGAGGATGACGAGGAAGATACATTTCAACCACAGAAAGGGAATGTGGTATTTGTGTGTGCTTTAGATGGGTGGGGATTTGGAATTAATGAGTTTGCTGAGTTTTATGCTTCAAAACTTGGGGCAAATGTATCTGCGTTGAAGAAGGCCTTGTGGGGTCCTCGGTATTTTAATCCAAAGACGAAGATGATAGTTGGAAAGAAGGCCATGGCTGGAGGAAGTAAAGCTCGGCCTATGTTTGTTCAATTTGTGCTTGAAAGACTTTGGGAAGTTTATGGTGCTGCTTTAGAAACTGATGGGAATAAGGAGGTGCTTCAAAAGGTTAATAGCACATTTAATTTGAATATACCAGCTCGAGAACTTTCTAATAAGGATCCAAAGGTGGTTCTCCAAGCTATTATGAGTCGATGGCTTCCTCTTTCAGATGCAATATTATCAATGGTTGTGAACTGTATGCCTGACCCAATTGCTGCGCAATCATTTCGAATATCACGATTGCTTCCAAAGAGGGATATCATTGATACTGGAGTTGGCATCGATGTGCTAACTGAGGCAGATCTTGTCAAGAAATCCATTGAAGCTTGTGATTCAAGGCCTGAAGCTCCATTTGTTGCTTTTGTGTCCAAGATGTTTGCAGTGCCATTTAAACTGCTTCCACGTAGGGACAATCACGGTGAGACTACTAATATTTCAGCTGATGATGGGGGAGATGGTGAATCAGATGAGTGTTTCCTTGCATTTGCAAGGGTATTTAGTGGGGTTCTTCATTCTGGGCAGAGAGTTTTTGTGCTTTCGGCTTTATATGACCCAACAAAAGGGGAATCAATGCAAAAGCACATTCAGGAGGCTGAGCTGCATTCATTTTATCTAATGATGGGTCAAGGCTTGAAACCAGTGGCCTCAGTAAAAGCAGGAAACCTTGTAGCAATTCGTGGTCTTAGCCATCATATACTGAAAAGTGCAACTCTTTCATCCACTAGAAATTGCTGGCCTTTCTCAAGTATGGCATTCCAGGTTTCACCAACTCTTAGAGTTGCGATTGAGCCATCTGATCCTGGAGATATAGGTGCATTGTTGAAAGGCTTAAGGCTTCTAAACCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCAGCAAGGGGAGAACATGTACTTGCTGCAGCAGGAGAAGTTCATCTTGAGAGATGCATAAAGGATTTGAAGGATAGGTTTGCCAGGGTAAACTTGGAAGTCTCTCCACCTCTTGTATCGTATAAAGAGACAATTGAAGGAGAGGCATCTGGTGTGTTGGATTATTTTAAGGTGTTATCTGAAAGCACAGAGTGTGTTACTAAGAAAACCGCAAACGGTAGATGTATCGTCAGAGTGCAGGTAATGAAACTTCCACCTGCTCTAGCTAAAGTACTTGATGAAAATTCTGACGTACTGGGGGATATTATTGGAGTCAAGTTGGGGCAGAACTATAAAAACTTGGAAACAAAGAGATCAAGTTTGAGAGAAAACGAGAATCCAGTAGAAGCATTAAAAAAACTCGTATTAGATGCAGCATATAGTAATATATCTTCAAAGGATGACCATGAAGGTAGTCGAGCTGACAAACAAAATGCACTGTGGTTGAAGCTTCTTAAGCGAATATGGGCCCTTGGACCTCAGCATATTGGTCCTAACATTCTGATTAACCCAGATCCTAAAGTAAAGGATTCTGATTGCTCCGTGCTAATTCAGGGGTCGCCTCATGCATCGGAGAGGTTGGGTTTTGTGGATGATTCTTCAAATAGTGACTTGGATTCTGAAACATCTTTGGTAGGTGATACAGCTTCTGTAGCATCACCAGATGGAACTCAGACACTATGCATGGAAGCAGCATCTCTCGAGAACAGTGTTCTATCTGGGTTTCAGCTTGCCACATCGGCTGGGCCCTTATGTGATGAACCTATGTGGGGGTTGGCATTTATTGTTGAGGCCTCTATTTCTTCACCGTCTGGGAATTCAGATGAATCTGAAGCTCCCTTTCAACCAGAGAATAATGCTATCTTTTCTGGACAAGTTATGGCAGCTGTAAAGGATGCCTGTAGAGCAGCTGTACTTCAGAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAGTTGAACACTCCCACTGAGTATTTGGGTCCAATGTATGCTGTACTTGCTCGAAGGAGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACTGTGCACGCATATGTGCCAGTTTCAGAAAGCTTTGGTTTTGCAGATGAGTTGAGGAGATGGACTTCTGGAGCAGCAAGTGCTCTTCTAGTGCTTAGCCATTGGGAAGAACTATGTGAAGATCCTTTTTTTGTCCCGAAGACAGAAGAAGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTGCTTCCCAACACAGCAAGAAAGCTCATTGATACTGTAAGACGGCGTAAGGGTCTTCCAGTGGAAGAAAAAGTCGTGCAGCATGCAACAAAGCAGAGAACTCTGGCTCGGAAAATTCCTGCTTACGCAAGAGATTTTCAGTCACCTTCAATCCTAATTCAACATGCTTCATTGGTATGCGACCTCGACCTGGTCCATCTGGAGTTTGCTTGGGAAATAATTTTTGGAGGTCCAGATGACAAAGTTGATCTGGAATTTCAAAGTTCCTCGGAAGGGTCTTTGGATCATGGTTTTTCCATTGTTCTTTTGCAAGACAGTGCGGGGAGAGGATCTTTAACCTTTTTGGCCTGCAAGTCTGTCTTCCTTGACAAGTGGGTGGAAGTTGAAAAGAAAAGCCTAGATTTTATGGAGCTAAATGCATCCCGGTGGTGTCACAACTATAGTAAATTCTTTTGTAACTACCCTCTCTCGATGATTCTTCTTGATTGGGAAGTCTATCCAAAGTTGGTTGTGGCACTTGTTGGGAGTACATCAGTTATGGCTGATGCAATGAAGGTGGCTGCAGAGATTTGTTCCAAAACATTCTGTGATGGGGAAGCGAACAATCGCGACCAACACAATTGA 3618 43.17 MGDLETQRIRNICILAHVDHGKTTLADHLIAASGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLSDVDSILAGSSGEVNDENLEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAEFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWEVYGAALETDGNKEVLQKVNSTFNLNIPARELSNKDPKVVLQAIMSRWLPLSDAILSMVVNCMPDPIAAQSFRISRLLPKRDIIDTGVGIDVLTEADLVKKSIEACDSRPEAPFVAFVSKMFAVPFKLLPRRDNHGETTNISADDGGDGESDECFLAFARVFSGVLHSGQRVFVLSALYDPTKGESMQKHIQEAELHSFYLMMGQGLKPVASVKAGNLVAIRGLSHHILKSATLSSTRNCWPFSSMAFQVSPTLRVAIEPSDPGDIGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFARVNLEVSPPLVSYKETIEGEASGVLDYFKVLSESTECVTKKTANGRCIVRVQVMKLPPALAKVLDENSDVLGDIIGVKLGQNYKNLETKRSSLRENENPVEALKKLVLDAAYSNISSKDDHEGSRADKQNALWLKLLKRIWALGPQHIGPNILINPDPKVKDSDCSVLIQGSPHASERLGFVDDSSNSDLDSETSLVGDTASVASPDGTQTLCMEAASLENSVLSGFQLATSAGPLCDEPMWGLAFIVEASISSPSGNSDESEAPFQPENNAIFSGQVMAAVKDACRAAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEEKVVQHATKQRTLARKIPAYARDFQSPSILIQHASLVCDLDLVHLEFAWEIIFGGPDDKVDLEFQSSSEGSLDHGFSIVLLQDSAGRGSLTFLACKSVFLDKWVEVEKKSLDFMELNASRWCHNYSKFFCNYPLSMILLDWEVYPKLVVALVGSTSVMADAMKVAAEICSKTFCDGEANNRDQHN 1205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10374503 10380135 + Lag0034747.1 Lac3g1219 601641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1219 1205 PRINTS GTP-binding elongation factor signature 77 87 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac3g1219 1205 PRINTS GTP-binding elongation factor signature 57 65 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac3g1219 1205 PRINTS GTP-binding elongation factor signature 11 24 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac3g1219 1205 PRINTS GTP-binding elongation factor signature 93 104 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac3g1219 1205 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac3g1219 1205 Gene3D Translation factors 350 533 - -
Lac3g1219 1205 Gene3D - 631 892 IPR014721 -
Lac3g1219 1205 Pfam Elongation factor Tu GTP binding domain 8 223 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac3g1219 1205 SUPERFAMILY Ribosomal protein S5 domain 2-like 610 897 IPR020568 -
Lac3g1219 1205 Gene3D - 894 1030 - -
Lac3g1219 1205 CDD EF2 10 232 - -
Lac3g1219 1205 SUPERFAMILY Translation proteins 388 530 IPR009000 -
Lac3g1219 1205 CDD aeEF2_snRNP_like_IV 607 902 - -
Lac3g1219 1205 Pfam Elongation factor G C-terminus 895 979 IPR000640 -
Lac3g1219 1205 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 7 239 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac3g1219 1205 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 6 1034 - GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0042256(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Lac3g1219 1205 FunFam Elongation factor like GTPase 1 224 333 - -
Lac3g1219 1205 FunFam Translation elongation factor 2 535 611 - -
Lac3g1219 1205 CDD eEF2_snRNP_like_C 898 976 - -
Lac3g1219 1205 Gene3D Elongation Factor G (Translational Gtpase), domain 3 534 611 - -
Lac3g1219 1205 FunFam Elongation factor 2-like protein 2 212 - -
Lac3g1219 1205 SUPERFAMILY EF-G C-terminal domain-like 898 996 IPR035647 -
Lac3g1219 1205 Gene3D - 3 210 IPR027417 -
Lac3g1219 1205 Gene3D Yeast translation eEF2 (G' domain) 224 333 - -
Lac3g1219 1205 CDD EF2_II 397 521 - -
Lac3g1219 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 348 IPR027417 -
Lac3g1219 1205 CDD EF2_snRNP_III 536 607 - -
Lac3g1219 1205 SUPERFAMILY EF-G C-terminal domain-like 533 608 IPR035647 -
Lac3g1219 1205 FunFam Elongation factor like GTPase 1 894 1029 - -
Lac3g1219 1205 SMART EFG_C_a 895 984 IPR000640 -
Lac3g1219 1205 NCBIfam small GTP-binding protein domain 9 138 IPR005225 GO:0005525(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0540 Lac-Chr12:5819933 Lac3g1219 Lac-Chr3:10374503 1.10E-23 dispersed
Lac3g1219 Lac-Chr3:10374503 Lac9g2244 Lac-Chr9:41810410 4.40E-119 dispersed
Lac3g1219 Lac-Chr3:10374503 Lac9g2266 Lac-Chr9:41996315 1.30E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1219 K14536 - csv:101220903 1900.56