Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1247 ATGATGATGATGTTTAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCCGCTCCAATTGTGGAAGGAGATGCCGTAGCTCCACCAGCCGATCCTGAAGTAGCGGTGGAAGATGATTATTCTGATGAAGAGATTGATGTCGATGAGCTCGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAGAGCAAGGTTAAGGAAGGGATCGATATTGCAAAGCAGCGACAGTCTCAAGATCAGGCTAGGAGGAAGAAGATGTCAAGGGCACATGATGGGATCTTGAAGTACATGCTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCAGAGAAGGGAAAACCGGTAACCGGGGCATCGGATAATCTTCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAATGGACCGGCTGCCATAGCCAAGTACCAGGCAGACAACGCAATTCCAGGACGAAACGACGGGTGTAATTCGATCGGTCCGACCCCACACACCTTGCAGGAACTTCAGGATACCACCCTAGGATCTCTGTTATCAGCTCTGATGCAACACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTCCTCCGCCATGGTGGCCGACTGGAGTTGAGGAATGGTGGCCTCAGCTCGGGTTGCCGAAGGACCAAGGTCCTCCACCTTACAAGAAGCCTCACGACTTGAAGAAAGCGTGGAAAGTCGGTGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATAGCTAAGATCCGCAAGCTTGTCAGGCAGTCTAAATGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAGGAGGAGATCTTGGCTCGGGAGCTTTATCCTGATTCTTGCCCGCCCTTGTCTTCCGGTGGGGGAAGTGGATCGCTGGTCATTAACGATTGCAGCGAGTACGATGTAGAAGGCGTTGAGGAGGAACCGAACTTTGATGTTCAAGATCGTAAACCTGATAACCATAACTCATTCAACTTGGGAATGGAGAGAATGAGAGAACGGGTGCCCCTTCGGCAACCACCTTATCCAATCAAAGGAGAGGTTGCCACAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTAAACATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTCCGTCTCGGGTTTAATGACAGAACATCCAGAGACAATCATCAGTTGACCTGCCCATACAGAACTTCTTCAGAGTTCAGTGGTTCAAATTTTCATGTCAATGAGGTTAAACCAGTTATCTTCCCTCAGTCGTTTGCCCCGCCCAAGCCAGCTCCACCCCCGGTCAGCTCAGTTCCATCTTCCTTCGACTTGTCTAGTTTAGGAGTTCCAGAAGATGGCCAAAAGCTCATCAGTGAGCTCATGTCGATCTACGACACCAACGTCCAAGGCAACAAGAACAACTTAAATACCGGTAACGGTGCCATGACAGAGAACCAAAATCTTCCTCAGTTGAAGATCCAACCTCAACAAGACGAGTACTTCCGCAATCAAGGTATAATGATCGAGGGAAACTTCTTCGAAGGATCAAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGATCGGTTTAAGCCAATGAATTCACCTTTCGAGAACAACAACCACCAGCACAACAACAACAACAACTTCCACTTGATGTTCGGGTCTCCATTTGATTTGTCGACCTTTGACTACAAAGAAGAAGTACCCGGAGCAGCAGCCATCGATACACTGTCGAAACAGCAGGATATTCCATTATGGTATCATTAA 1878 46.91 MMMMFNEMGFCDDMDFLSAPIVEGDAVAPPADPEVAVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSGGGSGSLVINDCSEYDVEGVEEEPNFDVQDRKPDNHNSFNLGMERMRERVPLRQPPYPIKGEVATNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSGSNFHVNEVKPVIFPQSFAPPKPAPPPVSSVPSSFDLSSLGVPEDGQKLISELMSIYDTNVQGNKNNLNTGNGAMTENQNLPQLKIQPQQDEYFRNQGIMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNNHQHNNNNNFHLMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYH 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10636244 10638121 - Lag0034775.1 Lac3g1247 601669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1247 625 Pfam Ethylene insensitive 3, DNA-binding domain 49 296 IPR047091 GO:0003700(InterPro)
Lac3g1247 625 Coils Coil 34 68 - -
Lac3g1247 625 FunFam Ethylene insensitive 3-like 1 81 159 - -
Lac3g1247 625 Gene3D - 173 306 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1247 625 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1247 625 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 3 608 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Lac3g1247 625 Gene3D - 81 158 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1247 625 FunFam Ethylene insensitive 3-like 1 169 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1247 K14514 - - csv:101206055 1166.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1247 Lac-Chr3:10636244 Lac8g2252 Lac-Chr8:40785075 6.40E-207 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1247 . 2 624 EIL Transcription Factor Family AT2G27050 59.8 2.4e-195 679.5
Lac8g2252 . 8 525 EIL Transcription Factor Family AT2G27050 60.3 5.0e-169 592.0
Lac3g1329 . 66 325 EIL Transcription Factor Family AT2G27050 64.3 4.9e-92 336.3
Lac3g1329 . 70 326 EIL Transcription Factor Family AT5G21120 50.8 1.3e-72 271.6
Lac3g1329 . 58 576 EIL Transcription Factor Family AT1G73730 56.3 1.2e-143 507.7
Lac3g1247 . 38 334 EIL Transcription Factor Family AT1G73730 62.6 3.1e-104 376.7
Lac8g2252 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 1.3e-102 371.3
Lac3g1247 . 3 624 EIL Transcription Factor Family AT3G20770 62.7 3.5e-213 738.8
Lac8g2252 . 7 505 EIL Transcription Factor Family AT3G20770 63.4 4.0e-172 602.4
Lac3g1329 . 66 292 EIL Transcription Factor Family AT3G20770 72.1 9.7e-94 342.0
Lac3g1329 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 3.9e-70 263.5
Lac3g1329 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23635 PF04873 EIN3 2.40E-129 No_clan Lac TF