Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1247 ATGATGATGATGTTTAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCCGCTCCAATTGTGGAAGGAGATGCCGTAGCTCCACCAGCCGATCCTGAAGTAGCGGTGGAAGATGATTATTCTGATGAAGAGATTGATGTCGATGAGCTCGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAGAGCAAGGTTAAGGAAGGGATCGATATTGCAAAGCAGCGACAGTCTCAAGATCAGGCTAGGAGGAAGAAGATGTCAAGGGCACATGATGGGATCTTGAAGTACATGCTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCAGAGAAGGGAAAACCGGTAACCGGGGCATCGGATAATCTTCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAATGGACCGGCTGCCATAGCCAAGTACCAGGCAGACAACGCAATTCCAGGACGAAACGACGGGTGTAATTCGATCGGTCCGACCCCACACACCTTGCAGGAACTTCAGGATACCACCCTAGGATCTCTGTTATCAGCTCTGATGCAACACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTCCTCCGCCATGGTGGCCGACTGGAGTTGAGGAATGGTGGCCTCAGCTCGGGTTGCCGAAGGACCAAGGTCCTCCACCTTACAAGAAGCCTCACGACTTGAAGAAAGCGTGGAAAGTCGGTGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATAGCTAAGATCCGCAAGCTTGTCAGGCAGTCTAAATGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAGGAGGAGATCTTGGCTCGGGAGCTTTATCCTGATTCTTGCCCGCCCTTGTCTTCCGGTGGGGGAAGTGGATCGCTGGTCATTAACGATTGCAGCGAGTACGATGTAGAAGGCGTTGAGGAGGAACCGAACTTTGATGTTCAAGATCGTAAACCTGATAACCATAACTCATTCAACTTGGGAATGGAGAGAATGAGAGAACGGGTGCCCCTTCGGCAACCACCTTATCCAATCAAAGGAGAGGTTGCCACAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTAAACATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTCCGTCTCGGGTTTAATGACAGAACATCCAGAGACAATCATCAGTTGACCTGCCCATACAGAACTTCTTCAGAGTTCAGTGGTTCAAATTTTCATGTCAATGAGGTTAAACCAGTTATCTTCCCTCAGTCGTTTGCCCCGCCCAAGCCAGCTCCACCCCCGGTCAGCTCAGTTCCATCTTCCTTCGACTTGTCTAGTTTAGGAGTTCCAGAAGATGGCCAAAAGCTCATCAGTGAGCTCATGTCGATCTACGACACCAACGTCCAAGGCAACAAGAACAACTTAAATACCGGTAACGGTGCCATGACAGAGAACCAAAATCTTCCTCAGTTGAAGATCCAACCTCAACAAGACGAGTACTTCCGCAATCAAGGTATAATGATCGAGGGAAACTTCTTCGAAGGATCAAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGATCGGTTTAAGCCAATGAATTCACCTTTCGAGAACAACAACCACCAGCACAACAACAACAACAACTTCCACTTGATGTTCGGGTCTCCATTTGATTTGTCGACCTTTGACTACAAAGAAGAAGTACCCGGAGCAGCAGCCATCGATACACTGTCGAAACAGCAGGATATTCCATTATGGTATCATTAA 1878 46.91 MMMMFNEMGFCDDMDFLSAPIVEGDAVAPPADPEVAVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSGGGSGSLVINDCSEYDVEGVEEEPNFDVQDRKPDNHNSFNLGMERMRERVPLRQPPYPIKGEVATNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSGSNFHVNEVKPVIFPQSFAPPKPAPPPVSSVPSSFDLSSLGVPEDGQKLISELMSIYDTNVQGNKNNLNTGNGAMTENQNLPQLKIQPQQDEYFRNQGIMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNNHQHNNNNNFHLMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYH 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10636244 10638121 - Lag0034775.1 Lac3g1247 601669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1247 625 Pfam Ethylene insensitive 3, DNA-binding domain 49 296 IPR047091 GO:0003700(InterPro)
Lac3g1247 625 Coils Coil 34 68 - -
Lac3g1247 625 FunFam Ethylene insensitive 3-like 1 81 159 - -
Lac3g1247 625 Gene3D - 173 306 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1247 625 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1247 625 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 3 608 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Lac3g1247 625 Gene3D - 81 158 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1247 625 FunFam Ethylene insensitive 3-like 1 169 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1247 Lac-Chr3:10636244 Lac8g2252 Lac-Chr8:40785075 6.40E-207 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23635 PF04873 EIN3 2.40E-129 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1247 K14514 - csv:101206055 1166.37