Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1272 ATGGATGAGAGAATCCCCATCTGGAAGTTTCATATGGTCAGAGAAATGGATGAGATATTGAGGCCTCATGAGATGTCAAGACCGCAGATTGCACAGCCAGCCAAGAGTTGTGTGTCTAAAGATGGTGTTTCTTTCCTTGACCAAGTTATTTGTCCTCTTTACGAGGTTCTGGCTGCGGAAGCTGCAAACAATAATAATGGACGGGCACCGCATTCTGCATGGAGAAACTATGATGATTTTAACGAGTACTTCTGGTCCCTTCGATGCTTCGAACTCAGTTGGCCATGGCATAAAGGCAAATCATTTTTTCAAAAGCCAACACCAAAGTCAAAGAATATGCTTAGTAGAAGTCGTCATCAAGGGAAAACTTCATTTGTTGAGCACCGGACTTTTCTTCATCTTTATCATAGTTTCCACCGTTTATGGATATTTTTGGTTATGATGTTCCAGGCTCTTACCATTGTTGCATTTAACAATGGAAACTTTAATATGGAGACTCTGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTTATTGAGAGTGTCCTAGATATCCTAATGATGTATGGTGCATATTCTACTTCGAGGCGTCTTGCTGTTTCTCGAATTTTTCTTCGTTTCCTTTGGTTCAGTATTGCTTCGGCTTCTGTAACGTTTCTTTATGTGAAAGCTCTTCAGGAGGGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTTTATGTAATTGTGATAGGAATATATGGTGGTGTGCAGCTTTTTCTTAGTATCCTCATGCGTATACCTGCTTGCCATCTTTTAACGAATCAATGTGATCGGTGGCCTCTTATTCGCTTTATCAAGTGGATGCGACAGGAACGGTACTATGTTGGACGTGGGATGTATGAGAGGACTACTGATTTTATCAATCGTTATCTTCCGCCACCGCATGTGTTCAACATCATGGTGGTAGTCATAGGCGTTCAACGCCTCTACTCGTCTGTGGTCGTCATGGGTTTGAAACATGTTTCATAG 1026 41.62 MDERIPIWKFHMVREMDEILRPHEMSRPQIAQPAKSCVSKDGVSFLDQVICPLYEVLAAEAANNNNGRAPHSAWRNYDDFNEYFWSLRCFELSWPWHKGKSFFQKPTPKSKNMLSRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLVMMFQALTIVAFNNGNFNMETLLEVLSLGPTFVVMKFIESVLDILMMYGAYSTSRRLAVSRIFLRFLWFSIASASVTFLYVKALQEGSKPNAERVMFRLYVIVIGIYGGVQLFLSILMRIPACHLLTNQCDRWPLIRFIKWMRQERYYVGRGMYERTTDFINRYLPPPHVFNIMVVVIGVQRLYSSVVVMGLKHVS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10946979 10957252 - Lag0034800.1 Lac3g1272 601694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1272 341 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 11 307 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Lac3g1272 341 SMART FKS1_dom1_2 10 97 IPR026899 -
Lac3g1272 341 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 12 94 IPR026899 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1272 K11000 - - csv:101216435 561.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0107 Lac-Chr3:768104 Lac3g1272 Lac-Chr3:10946979 5.80E-82 dispersed
Lac3g1272 Lac-Chr3:10946979 Lac3g1283 Lac-Chr3:11051644 1.90E-35 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0229 . 1 1032 Cell Wall Biosynthesis AT5G17420 85.3 0.0e+00 1842.0
Lac1g2418 . 1 1090 Cell Wall Biosynthesis AT5G17420 64.8 0.0e+00 1442.2
Lac1g1247 . 100 1158 Cell Wall Biosynthesis AT5G17420 67.1 0.0e+00 1435.6
Lac4g2655 . 9 1082 Cell Wall Biosynthesis AT5G17420 66.8 0.0e+00 1432.9
Lac2g0618 . 35 1116 Cell Wall Biosynthesis AT5G17420 65.6 0.0e+00 1431.4
Lac4g2074 . 2 1040 Cell Wall Biosynthesis AT5G17420 65.9 0.0e+00 1395.2
Lac2g2618 . 1 1066 Cell Wall Biosynthesis AT5G17420 59.3 0.0e+00 1303.5
Lac10g0971 . 5 968 Cell Wall Biosynthesis AT5G17420 60.2 0.0e+00 1219.9
Lac2g0004 . 1 982 Cell Wall Biosynthesis AT5G17420 55.2 0.0e+00 1147.9
Lac3g0105 . 44 727 Cell Wall Biosynthesis AT3G07160 74.7 1.1e-305 1047.7
Lac3g1269 . 11 611 Cell Wall Biosynthesis AT3G07160 83.2 2.2e-295 1013.4
Lac2g1105 . 520 1288 Cell Wall Biosynthesis AT3G07160 52.1 1.0e-226 785.4
Lac3g1282 . 17 581 Cell Wall Biosynthesis AT3G07160 60.2 2.5e-193 674.5
Lac3g1271 . 33 449 Cell Wall Biosynthesis AT3G07160 72.2 2.7e-171 601.3
Lac3g0106 . 153 591 Cell Wall Biosynthesis AT3G07160 59.0 1.2e-142 506.1
Lac3g1272 . 11 306 Cell Wall Biosynthesis AT3G07160 69.2 8.4e-117 420.2
Lac3g0107 . 1 406 Cell Wall Biosynthesis AT3G07160 51.1 1.9e-116 419.1
Lac3g1274 . 28 296 Cell Wall Biosynthesis AT3G07160 75.5 1.3e-112 406.4
Lac3g1270 . 3 208 Cell Wall Biosynthesis AT3G07160 77.7 6.9e-87 320.9
Lac3g0110 . 1 149 Cell Wall Biosynthesis AT3G07160 57.7 2.0e-38 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117