Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1291 ATGGAAGACGAAGCTTCCACCAGCTTCCTTTCCCTCAACAAGACCCCTCTCCTCACAGACGAAGTTACAGATTCTAATTTTTCAGATTACGCCATACCTGCTGCCAAGCGGCCGAGATTGGACCACGATCTTAACGATGTCGCCGCAGTTGGGAAATTCAAAGGCGTTGTGCCGCAACAGAACGGCCGTTGGGGAGCGCAGATCTACGCGAACCACCAGAGGATCTGGCTAGGCACCTTCAAGTCGGAGAAAGACGCCGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGAACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGGTCAATCGAGGAGCCGAATTTTCAAATCAAATTCTCCACAGACGCTGTTTTGAGCATGATTAAAGATGGATCGTATTCCTCGAAATTTTCCGCCTATTTACGAACGAAATCTCAAATTTGCGACTCGAACTCACAGAATCCCCAAAATTTCGACAATGCCGATGGCGATGGCCATTTCTCTTGCAGCCATCTTTTCCAAAAGGAATTAACACCGAGTGACGTCGGCAAGCTCAATCGACTCGTAATCCCTAAAAAATACGCAGTCAAACACTTTCCATACATCAGCGACAGCGCAGAGGAGAACGGCGACGACATCGAAATTGTCTTCTACGATACGTCGATGAAGACATGGAAGTTCCGATACTGTTACTGGAGAAGCAGCCAGAGCTTCGTCTTCACCAGAGGCTGGAATCGATTCGTGAAGGAGAAGAAACTGAAGGCGAACGACATCATCACGTTTTACACATACGAGAGCTGCGGAAGAGACGAAAATGGCGGAACATTGAACTTCATCGACGTGATCTACAAGAAAACGGAAGATGATAAGAGCGAGAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTATGAAGAATGAGAAGTTGCAGAGGGAATTAGGGCTTGATCGGGAGAAAGATTGTGAGAAGATGAAGAAGAAGGAGATTTTGAACAGTGAATTGAAGAACCCTAATAGTGAAAATGTTGGGGAAAAGCGAGTAAGGCTCTTTGGAGTACATATTGATTGA 1074 47.3 MEDEASTSFLSLNKTPLLTDEVTDSNFSDYAIPAAKRPRLDHDLNDVAAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIKLRTRDSHRNFPWTRRSIEEPNFQIKFSTDAVLSMIKDGSYSSKFSAYLRTKSQICDSNSQNPQNFDNADGDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISDSAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKTEDDKSESSCLAAEKESMKNEKLQRELGLDREKDCEKMKKKEILNSELKNPNSENVGEKRVRLFGVHID 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11145011 11146084 + Lag0034819.1 Lac3g1291 601713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1291 357 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1291 357 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Lac3g1291 357 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Lac3g1291 357 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1291 357 Gene3D - 164 294 IPR015300 -
Lac3g1291 357 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1291 357 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Lac3g1291 357 Pfam B3 DNA binding domain 176 266 IPR003340 GO:0003677(InterPro)
Lac3g1291 357 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
Lac3g1291 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 356 IPR044800 GO:0003700(InterPro)
Lac3g1291 357 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Lac3g1291 357 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Lac3g1291 357 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1291 K09287 - - csv:101219913 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0460 Lac-Chr13:3330246 Lac3g1291 Lac-Chr3:11145011 7.20E-46 dispersed
Lac3g0203 Lac-Chr3:1439955 Lac3g1291 Lac-Chr3:11145011 2.90E-84 dispersed
Lac3g1291 Lac-Chr3:11145011 Lac5g2156 Lac-Chr5:40128244 1.20E-24 dispersed
Lac3g1291 Lac-Chr3:11145011 Lac8g1280 Lac-Chr8:27917084 8.90E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g2827 . 1 144 RAV Transcription Factor Family AT2G36080 68.8 1.0e-53 207.2
Lac12g1184 . 95 207 RAV Transcription Factor Family AT2G36080 69.0 4.5e-41 165.2
Lac5g2156 . 50 190 RAV Transcription Factor Family AT2G36080 59.0 7.6e-41 164.5
Lac11g1849 . 39 152 RAV Transcription Factor Family AT2G36080 70.1 5.0e-40 161.8
Lac13g0460 . 183 312 RAV Transcription Factor Family AT2G36080 58.8 4.6e-38 155.2
Lac12g1184 . 95 309 RAV Transcription Factor Family AT2G46870 57.7 1.6e-57 220.7
Lac11g1849 . 43 159 RAV Transcription Factor Family AT2G46870 88.1 2.3e-56 216.9
Lac5g2156 . 55 165 RAV Transcription Factor Family AT2G46870 86.6 7.0e-53 205.3
Lac13g0460 . 189 300 RAV Transcription Factor Family AT2G46870 69.0 3.4e-39 159.8
Lac10g2827 . 35 145 RAV Transcription Factor Family AT2G46870 67.5 7.5e-39 158.7
Lac8g1280 . 170 275 RAV Transcription Factor Family AT2G46870 68.8 2.0e-36 150.6
Lac10g2827 . 1 147 RAV Transcription Factor Family AT3G11580 58.0 8.3e-43 171.4
Lac12g1184 . 92 207 RAV Transcription Factor Family AT3G11580 64.6 2.3e-40 163.3
Lac11g1849 . 39 154 RAV Transcription Factor Family AT3G11580 61.4 2.5e-39 159.8
Lac5g2156 . 55 164 RAV Transcription Factor Family AT3G11580 63.6 1.2e-38 157.5
Lac12g1184 . 92 309 RAV Transcription Factor Family AT3G61970 55.9 3.8e-56 216.1
Lac11g1849 . 28 159 RAV Transcription Factor Family AT3G61970 75.6 3.0e-53 206.5
Lac5g2156 . 50 165 RAV Transcription Factor Family AT3G61970 78.2 1.3e-48 191.0
Lac10g2827 . 29 145 RAV Transcription Factor Family AT3G61970 65.0 7.0e-42 168.7
Lac13g0460 . 189 297 RAV Transcription Factor Family AT3G61970 70.0 2.5e-39 160.2
Lac8g1280 . 166 275 RAV Transcription Factor Family AT3G61970 67.0 2.6e-36 150.2
Lac11g1849 . 44 159 RAV Transcription Factor Family AT4G01500 67.5 1.0e-41 168.3
Lac12g1184 . 91 206 RAV Transcription Factor Family AT4G01500 66.7 1.0e-41 168.3
Lac5g2156 . 56 164 RAV Transcription Factor Family AT4G01500 68.1 8.1e-39 158.7
Lac10g2827 . 35 144 RAV Transcription Factor Family AT5G06250 76.1 1.2e-45 181.0
Lac5g2156 . 56 164 RAV Transcription Factor Family AT5G06250 69.7 3.1e-41 166.4
Lac12g1184 . 96 204 RAV Transcription Factor Family AT5G06250 68.1 4.0e-41 166.0
Lac11g1849 . 44 152 RAV Transcription Factor Family AT5G06250 65.5 1.0e-39 161.4
Lac13g0460 . 189 297 RAV Transcription Factor Family AT5G06250 62.4 1.0e-36 151.4
Lac8g1280 . 167 275 RAV Transcription Factor Family AT5G06250 66.1 2.3e-36 150.2
Lac3g0203 . 41 339 RAV Transcription Factor Family AT1G50680 52.4 1.3e-84 310.8
Lac3g1291 . 52 357 RAV Transcription Factor Family AT1G50680 50.6 4.4e-77 285.8
Lac3g0203 . 41 339 RAV Transcription Factor Family AT1G51120 53.4 3.2e-86 316.2
Lac3g1291 . 52 279 RAV Transcription Factor Family AT1G51120 61.4 2.7e-77 286.6
Lac13g0460 . 33 353 RAV Transcription Factor Family AT1G13260 67.0 2.7e-106 382.9
Lac8g1280 . 41 323 RAV Transcription Factor Family AT1G13260 66.9 3.3e-96 349.4
Lac11g1849 . 45 158 RAV Transcription Factor Family AT1G13260 68.7 9.2e-38 155.2
Lac12g1184 . 97 214 RAV Transcription Factor Family AT1G13260 65.9 2.7e-37 153.7
Lac5g2156 . 49 164 RAV Transcription Factor Family AT1G13260 65.8 1.3e-36 151.4
Lac10g2827 . 36 144 RAV Transcription Factor Family AT1G13260 67.9 1.7e-36 151.0
Lac13g0460 . 6 351 RAV Transcription Factor Family AT3G25730 60.2 6.3e-100 361.7
Lac8g1280 . 41 321 RAV Transcription Factor Family AT3G25730 62.7 5.0e-89 325.5
Lac10g2827 . 38 144 RAV Transcription Factor Family AT3G25730 67.3 7.5e-37 152.1
Lac13g0460 . 1 354 RAV Transcription Factor Family AT1G68840 61.5 1.5e-112 403.7
Lac8g1280 . 1 324 RAV Transcription Factor Family AT1G68840 57.7 3.4e-96 349.4
Lac12g1184 . 96 209 RAV Transcription Factor Family AT1G68840 68.1 1.9e-38 157.5
Lac11g1849 . 44 152 RAV Transcription Factor Family AT1G68840 70.3 3.2e-38 156.8
Lac5g2156 . 49 164 RAV Transcription Factor Family AT1G68840 64.4 2.7e-37 153.7
Lac10g2827 . 35 144 RAV Transcription Factor Family AT1G68840 68.2 2.7e-37 153.7
Lac13g0460 . 6 351 RAV Transcription Factor Family AT3G25730 60.2 6.3e-100 361.7
Lac8g1280 . 41 321 RAV Transcription Factor Family AT3G25730 62.7 5.0e-89 325.5
Lac10g2827 . 38 144 RAV Transcription Factor Family AT3G25730 67.3 7.5e-37 152.1
Lac3g0203 . 41 339 RAV Transcription Factor Family AT1G51120 53.4 3.2e-86 316.2
Lac3g1291 . 52 279 RAV Transcription Factor Family AT1G51120 61.4 2.7e-77 286.6
Lac10g2827 . 1 147 RAV Transcription Factor Family AT3G11580 58.0 8.3e-43 171.4
Lac12g1184 . 92 207 RAV Transcription Factor Family AT3G11580 64.6 2.3e-40 163.3
Lac11g1849 . 39 154 RAV Transcription Factor Family AT3G11580 61.4 2.5e-39 159.8
Lac5g2156 . 55 164 RAV Transcription Factor Family AT3G11580 63.6 1.2e-38 157.5
Lac11g1849 . 44 159 RAV Transcription Factor Family AT4G01500 67.5 1.0e-41 168.3
Lac12g1184 . 91 206 RAV Transcription Factor Family AT4G01500 66.7 1.0e-41 168.3
Lac5g2156 . 56 164 RAV Transcription Factor Family AT4G01500 68.1 8.1e-39 158.7
Lac10g2827 . 1 144 RAV Transcription Factor Family AT2G36080 68.8 1.0e-53 207.2
Lac12g1184 . 95 207 RAV Transcription Factor Family AT2G36080 69.0 4.5e-41 165.2
Lac5g2156 . 50 190 RAV Transcription Factor Family AT2G36080 59.0 7.6e-41 164.5
Lac11g1849 . 39 152 RAV Transcription Factor Family AT2G36080 70.1 5.0e-40 161.8
Lac13g0460 . 183 312 RAV Transcription Factor Family AT2G36080 58.8 4.6e-38 155.2
Lac10g2827 . 35 144 RAV Transcription Factor Family AT5G06250 76.1 1.2e-45 181.0
Lac5g2156 . 56 164 RAV Transcription Factor Family AT5G06250 69.7 3.1e-41 166.4
Lac12g1184 . 96 204 RAV Transcription Factor Family AT5G06250 68.1 4.0e-41 166.0
Lac11g1849 . 44 152 RAV Transcription Factor Family AT5G06250 65.5 1.0e-39 161.4
Lac13g0460 . 189 297 RAV Transcription Factor Family AT5G06250 62.4 1.0e-36 151.4
Lac8g1280 . 167 275 RAV Transcription Factor Family AT5G06250 66.1 2.3e-36 150.2
Lac12g1184 . 95 309 RAV Transcription Factor Family AT2G46870 57.7 1.6e-57 220.7
Lac11g1849 . 43 159 RAV Transcription Factor Family AT2G46870 88.1 2.3e-56 216.9
Lac5g2156 . 55 165 RAV Transcription Factor Family AT2G46870 86.6 7.0e-53 205.3
Lac13g0460 . 189 300 RAV Transcription Factor Family AT2G46870 69.0 3.4e-39 159.8
Lac10g2827 . 35 145 RAV Transcription Factor Family AT2G46870 67.5 7.5e-39 158.7
Lac8g1280 . 170 275 RAV Transcription Factor Family AT2G46870 68.8 2.0e-36 150.6
Lac3g0203 . 41 339 RAV Transcription Factor Family AT1G50680 52.4 1.3e-84 310.8
Lac3g1291 . 52 357 RAV Transcription Factor Family AT1G50680 50.6 4.4e-77 285.8
Lac12g1184 . 92 309 RAV Transcription Factor Family AT3G61970 55.9 3.8e-56 216.1
Lac11g1849 . 28 159 RAV Transcription Factor Family AT3G61970 75.6 3.0e-53 206.5
Lac5g2156 . 50 165 RAV Transcription Factor Family AT3G61970 78.2 1.3e-48 191.0
Lac10g2827 . 29 145 RAV Transcription Factor Family AT3G61970 65.0 7.0e-42 168.7
Lac13g0460 . 189 297 RAV Transcription Factor Family AT3G61970 70.0 2.5e-39 160.2
Lac8g1280 . 166 275 RAV Transcription Factor Family AT3G61970 67.0 2.6e-36 150.2
Lac13g0460 . 33 353 RAV Transcription Factor Family AT1G13260 67.0 2.7e-106 382.9
Lac8g1280 . 41 323 RAV Transcription Factor Family AT1G13260 66.9 3.3e-96 349.4
Lac11g1849 . 45 158 RAV Transcription Factor Family AT1G13260 68.7 9.2e-38 155.2
Lac12g1184 . 97 214 RAV Transcription Factor Family AT1G13260 65.9 2.7e-37 153.7
Lac5g2156 . 49 164 RAV Transcription Factor Family AT1G13260 65.8 1.3e-36 151.4
Lac10g2827 . 36 144 RAV Transcription Factor Family AT1G13260 67.9 1.7e-36 151.0
Lac13g0460 . 1 354 RAV Transcription Factor Family AT1G68840 61.5 1.5e-112 403.7
Lac8g1280 . 1 324 RAV Transcription Factor Family AT1G68840 57.7 3.4e-96 349.4
Lac12g1184 . 96 209 RAV Transcription Factor Family AT1G68840 68.1 1.9e-38 157.5
Lac11g1849 . 44 152 RAV Transcription Factor Family AT1G68840 70.3 3.2e-38 156.8
Lac5g2156 . 49 164 RAV Transcription Factor Family AT1G68840 64.4 2.7e-37 153.7
Lac10g2827 . 35 144 RAV Transcription Factor Family AT1G68840 68.2 2.7e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23637 PF02362 B3 7.30E-27 CL0405 Lac TF