Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1291 ATGGAAGACGAAGCTTCCACCAGCTTCCTTTCCCTCAACAAGACCCCTCTCCTCACAGACGAAGTTACAGATTCTAATTTTTCAGATTACGCCATACCTGCTGCCAAGCGGCCGAGATTGGACCACGATCTTAACGATGTCGCCGCAGTTGGGAAATTCAAAGGCGTTGTGCCGCAACAGAACGGCCGTTGGGGAGCGCAGATCTACGCGAACCACCAGAGGATCTGGCTAGGCACCTTCAAGTCGGAGAAAGACGCCGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGAACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGGTCAATCGAGGAGCCGAATTTTCAAATCAAATTCTCCACAGACGCTGTTTTGAGCATGATTAAAGATGGATCGTATTCCTCGAAATTTTCCGCCTATTTACGAACGAAATCTCAAATTTGCGACTCGAACTCACAGAATCCCCAAAATTTCGACAATGCCGATGGCGATGGCCATTTCTCTTGCAGCCATCTTTTCCAAAAGGAATTAACACCGAGTGACGTCGGCAAGCTCAATCGACTCGTAATCCCTAAAAAATACGCAGTCAAACACTTTCCATACATCAGCGACAGCGCAGAGGAGAACGGCGACGACATCGAAATTGTCTTCTACGATACGTCGATGAAGACATGGAAGTTCCGATACTGTTACTGGAGAAGCAGCCAGAGCTTCGTCTTCACCAGAGGCTGGAATCGATTCGTGAAGGAGAAGAAACTGAAGGCGAACGACATCATCACGTTTTACACATACGAGAGCTGCGGAAGAGACGAAAATGGCGGAACATTGAACTTCATCGACGTGATCTACAAGAAAACGGAAGATGATAAGAGCGAGAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTATGAAGAATGAGAAGTTGCAGAGGGAATTAGGGCTTGATCGGGAGAAAGATTGTGAGAAGATGAAGAAGAAGGAGATTTTGAACAGTGAATTGAAGAACCCTAATAGTGAAAATGTTGGGGAAAAGCGAGTAAGGCTCTTTGGAGTACATATTGATTGA 1074 47.3 MEDEASTSFLSLNKTPLLTDEVTDSNFSDYAIPAAKRPRLDHDLNDVAAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIKLRTRDSHRNFPWTRRSIEEPNFQIKFSTDAVLSMIKDGSYSSKFSAYLRTKSQICDSNSQNPQNFDNADGDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISDSAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKTEDDKSESSCLAAEKESMKNEKLQRELGLDREKDCEKMKKKEILNSELKNPNSENVGEKRVRLFGVHID 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11145011 11146084 + Lag0034819.1 Lac3g1291 601713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1291 357 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1291 357 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Lac3g1291 357 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Lac3g1291 357 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1291 357 Gene3D - 164 294 IPR015300 -
Lac3g1291 357 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1291 357 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Lac3g1291 357 Pfam B3 DNA binding domain 176 266 IPR003340 GO:0003677(InterPro)
Lac3g1291 357 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
Lac3g1291 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 356 IPR044800 GO:0003700(InterPro)
Lac3g1291 357 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Lac3g1291 357 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Lac3g1291 357 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0460 Lac-Chr13:3330246 Lac3g1291 Lac-Chr3:11145011 7.20E-46 dispersed
Lac3g0203 Lac-Chr3:1439955 Lac3g1291 Lac-Chr3:11145011 2.90E-84 dispersed
Lac3g1291 Lac-Chr3:11145011 Lac5g2156 Lac-Chr5:40128244 1.20E-24 dispersed
Lac3g1291 Lac-Chr3:11145011 Lac8g1280 Lac-Chr8:27917084 8.90E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23637 PF02362 B3 7.30E-27 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1291 K09287 - csv:101219913 612.838