Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1293 ATGAGGCCTGTCAAACGCGAACCCGTCGCCAGCAGCCGCAGTAATCGGAGTACTGGCGGCGGCGCCGACGATGCTGCGAATTTAAGGGATGTTAAGCGGGAGAGGGTTGCTAGGGAGCGAGAGAACTCCCCCGAGGACAACACGACTGAAGAAGAAGAGGGTCGGCAAGACTTGTCGAAGCGGCGGGTCCTTCGGTCTCGGTACCTCGCGGTCATTCATGAGATTAGTGAAAGGAGAGAGGATTTGTCGAAGGATTTGGATAAGTTTAATGTTATCATCAGTGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAAGCCAAGGGAACAAGTTGCAGATGCAGAAGCGTTGCAGGATATTGCAAACTCCCTCGTGACATCTATTAGGTCCCAGTCCAATGAAGGTGTTACTCCATCAGATTTTGTTAGTTGTCTGCTCAGAGAGTTTGCTGACATTAACGTAACATCTAGAGAAAACGATCTGGTTTCTGTCAGTTGGAAAGATATTGGACTCAGTGTTTCGTCTATTTTCATGAATGGCCATGGGTGCCGCACCATGCTTGGACCTATGAGTACTCAGTTGAAGCAACGAAAGACTATTACCAGGAAGCGTTCCAGGCCTACTGAAAGTTCTAGACCTGCAGAGGTTGAAGAAAATGCGTCTGAAGAAAAAACAGATACAGATAAGAACATGAGTATCATGTTTCTGATTTTGAGGAGGAATAAAACCGTTAAACTTGAACATTTGATATTGAATAGAAAGTCTTTTGCACAGACGGTAGAGAACTTATTTGCTCTGTCCTTTCTGGTTAAGGATGGTCGTGCTGAGATAACTATTGATAAAAACGGCTGTCATCTTGTGTCACCGAAGAATGCCCCTGCTCATAGTGCTATTATGTCACATGAAGTTAATTACAGTCATTTTGTATTCAGATTCGATTTCAAGGATTGGAAGCTGATGATGGATATGGTACCAGTTGGAGAGGAGCTGATGCCTCACAGGAATTTTCTGAATTCAGCACCAATGCCCCCAGCAGAAGCATCAGGGAATGATTCCGAAGCAGCAGCATTGCCTACCACACCAATTCGAAAGCTGTCAAGAAATCGAGGTTTAGTTATGCAATCTGTTGTTGAGGATTCTCCCGATAATGGCACTGATTCAGGACCAACTGCAATTTTGAGGTGCAAGAGAAAGCTTAGTCAAGGTTTAGTAAATTAG 1215 44.94 MRPVKREPVASSRSNRSTGGGADDAANLRDVKRERVARERENSPEDNTTEEEEGRQDLSKRRVLRSRYLAVIHEISERREDLSKDLDKFNVIISEVEKLHEQVQKPREQVADAEALQDIANSLVTSIRSQSNEGVTPSDFVSCLLREFADINVTSRENDLVSVSWKDIGLSVSSIFMNGHGCRTMLGPMSTQLKQRKTITRKRSRPTESSRPAEVEENASEEKTDTDKNMSIMFLILRRNKTVKLEHLILNRKSFAQTVENLFALSFLVKDGRAEITIDKNGCHLVSPKNAPAHSAIMSHEVNYSHFVFRFDFKDWKLMMDMVPVGEELMPHRNFLNSAPMPPAEASGNDSEAAALPTTPIRKLSRNRGLVMQSVVEDSPDNGTDSGPTAILRCKRKLSQGLVN 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11161152 11163583 - Lag0034821.1 Lac3g1293 601715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1293 404 PANTHER UNCHARACTERIZED 34 370 IPR027786 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006281(PANTHER)|GO:0006281(InterPro)|GO:0030915(PANTHER)|GO:0030915(InterPro)
Lac3g1293 404 MobiDBLite consensus disorder prediction 194 224 - -
Lac3g1293 404 MobiDBLite consensus disorder prediction 1 59 - -
Lac3g1293 404 MobiDBLite consensus disorder prediction 340 360 - -
Lac3g1293 404 MobiDBLite consensus disorder prediction 26 45 - -
Lac3g1293 404 Pfam Nse4 C-terminal 243 330 IPR014854 -
Lac3g1293 404 MobiDBLite consensus disorder prediction 202 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1293 K22825 - - csv:101220149 655.595
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1293 . 66 399 Non-SMC Element family AT1G51130 56.3 5.6e-95 345.5
Lac3g1293 . 66 333 Non-SMC Element family AT3G20760 55.5 6.3e-80 295.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35