Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1329 ATGGAGAATCTTATGATGGTTGATGATGCTTTGGGAGATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATCGAAGCAGAGGATCTGGAGAAGCGTATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAAAGACAGAAGATTGCTGCACAACAGGCTGCGGAGAAGCAGAAACCAAAGCAGACATCTGACCAAGCTCGGAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTATATGCTGAAACTGATGGAAGTATGCAAAGCTCGCGGATTTGTATATGGCATTATACCTGAAAAGGGGAAGCCAGTTAGTGGTGCTTCCGATAACATTCGAGCTTGGTGGAAAGAAAAGGTTAAATTCGATAAGAATGGACCGGCTGCCATAGCTAAGTATGAAGCAGAATGTCTTGCCAAGGGAGAGGCTGATGGAAATGGAAGCGGTAATTCCCAGAGCGTTCTTCAAGACCTGCAGGATGCGACCCTCGGGTCTCTTTTGTCTTCTTTGATGCAACATTGCGATCCCCCTCAGCGGAAGTACCCTTTAGAAAAGGGGGTTCCTCCACCCTGGTGGCCCTCTGGAAATGAAGATTGGTGGGCAAAACTTGGTCTTTCCCATGGCAATAGTCCTCCTTATAAGAAGCCACATGATTTGAAGAAGATGTGGAAAGTTGGGGTTTTAACAGCTGTGATTAAACATATGTCGCCTGATATTGCTAAGATAAGGAGGCATGTACGCCAGTCGAAATGCTTACAAGATAAGATGACAGCAAAGGAGAGTGCAATTTGGTTGGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCGAGCAGTGATAATGGGGCATCTGGAATAACAGAGACACCAGTAGGTCGCCGTGAAAAGCAAGCTGCAGTAAGCAGTGACAGTGACTATGATGTTGATCTTGCTGATGATGGTGTCGGGTCAGTTTCTTCTAAAGAGGACAGGAGAAACCAATCAGTAGATGCGGAGCCATCCAGTAATCTACATAGTAATACTCCTCAACCTGCTCAAGTAAAGGAGCAAGGTGAAAAGCATAGGAGAAAAAGGCATCGTGGTGGCAGGACAAAACCTGTCGATCAAACACTGGCTCCATCTCAGAACGAAGAAGAACCAAGCATGGAACCAAGAAATACTCATCTAGATATAAACCATTCTGATGTACCATTAGATAGATTTGAAATACCAGGAAACCAACTAGAAAAGGATACTGTCACAGCTTTGAGGCCACTGGAGAAGGATTTGGATGTCCAATCAGAAGTACCAGCTGCCCGGTTCAACGTGTTCTCTGCAACGCCCTCTGAAAATATCAACATAATTTCCACCCAGAGCATGTATGTTGATGGAAGACCTTTGTTGTATCCTGTAATGCAGAATGCTGAGGTACAACATGAAAGTGCTTACAATATTTATAATCCATCGATGGAATATAGATCCAATCATGATGTACAGCATCCTCAATTTGTTAATGAGCATGAAATGAGATTGGAGGAAGGAGTACATGTGCCAACACAACATAGAAACAATGAGACTATAGGAGATTTCAACTATGTAAAAGAAACGTTCAACACCGAACAAGACCGGCCTGTTGATACACAGTTTGGATCACCAATCAACAGTCTATCATTGGATTATGGAGCATTTAATAGTCCGTTCCATCTTGGAATCGACGGTGCAAGCTCGTTCGATGACTTTTTGGTTGATGACGATTTGATCCAATACTTCGGGATTGACTGCAAGAATGCAGCTCACCGACCTCCACGCTTGACGGGGTTCTTTTCCCCGGTTAGCTGGGAACCTTCCTCTTTGATCTTATCTAATATTATCAAGACTGTAGGCTACATTTGTAGGAGAATTCATGACATTATAATTCTCATGTTCTGGTTCCCTTTTTGTATGATCCATTCATCAATCTTTCTCCAATCTCTGCCGCCTACTTATGAATTAAGCCTACCCTATCCTGTTCTTGATACCCTACTCTCTTCCGAGTTTCACCCGTTCATAGTGAGGCCATGCTATGAAGTAGTATCAGCTGGGCAGTTTCGATCGCGCTTGGGTGTTACCGGTGGATCATATGTTTTGTAG 2157 43.44 MENLMMVDDALGDCSDMEVDDIRCDNIAEKDVSDEEIEAEDLEKRMWKDRIKLKRIKERQKIAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAKGEADGNGSGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWAKLGLSHGNSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASGITETPVGRREKQAAVSSDSDYDVDLADDGVGSVSSKEDRRNQSVDAEPSSNLHSNTPQPAQVKEQGEKHRRKRHRGGRTKPVDQTLAPSQNEEEPSMEPRNTHLDINHSDVPLDRFEIPGNQLEKDTVTALRPLEKDLDVQSEVPAARFNVFSATPSENINIISTQSMYVDGRPLLYPVMQNAEVQHESAYNIYNPSMEYRSNHDVQHPQFVNEHEMRLEEGVHVPTQHRNNETIGDFNYVKETFNTEQDRPVDTQFGSPINSLSLDYGAFNSPFHLGIDGASSFDDFLVDDDLIQYFGIDCKNAAHRPPRLTGFFSPVSWEPSSLILSNIIKTVGYICRRIHDIIILMFWFPFCMIHSSIFLQSLPPTYELSLPYPVLDTLLSSEFHPFIVRPCYEVVSAGQFRSRLGVTGGSYVL 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11719073 11721949 + Lag0034857.1 Lac3g1329 601751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1329 718 MobiDBLite consensus disorder prediction 346 363 - -
Lac3g1329 718 MobiDBLite consensus disorder prediction 62 85 - -
Lac3g1329 718 FunFam Ethylene insensitive 3-like 1 74 152 - -
Lac3g1329 718 Pfam Ethylene insensitive 3, DNA-binding domain 40 287 IPR047091 GO:0003700(InterPro)
Lac3g1329 718 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 564 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Lac3g1329 718 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1329 718 MobiDBLite consensus disorder prediction 289 402 - -
Lac3g1329 718 Gene3D - 160 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1329 718 Gene3D - 74 152 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1329 718 Coils Coil 25 59 - -
Lac3g1329 718 FunFam Ethylene insensitive 3-like 1 161 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1329 K14514 - - csv:101210347 1040.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1329 Lac-Chr3:11719073 Lac8g2252 Lac-Chr8:40785075 5.00E-94 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1247 . 2 624 EIL Transcription Factor Family AT2G27050 59.8 2.4e-195 679.5
Lac8g2252 . 8 525 EIL Transcription Factor Family AT2G27050 60.3 5.0e-169 592.0
Lac3g1329 . 66 325 EIL Transcription Factor Family AT2G27050 64.3 4.9e-92 336.3
Lac3g1329 . 70 326 EIL Transcription Factor Family AT5G21120 50.8 1.3e-72 271.6
Lac3g1329 . 58 576 EIL Transcription Factor Family AT1G73730 56.3 1.2e-143 507.7
Lac3g1247 . 38 334 EIL Transcription Factor Family AT1G73730 62.6 3.1e-104 376.7
Lac8g2252 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 1.3e-102 371.3
Lac3g1247 . 3 624 EIL Transcription Factor Family AT3G20770 62.7 3.5e-213 738.8
Lac8g2252 . 7 505 EIL Transcription Factor Family AT3G20770 63.4 4.0e-172 602.4
Lac3g1329 . 66 292 EIL Transcription Factor Family AT3G20770 72.1 9.7e-94 342.0
Lac3g1329 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 3.9e-70 263.5
Lac3g1329 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008299 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23638 PF04873 EIN3 2.80E-127 No_clan Lac TF