Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1329 ATGGAGAATCTTATGATGGTTGATGATGCTTTGGGAGATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATCGAAGCAGAGGATCTGGAGAAGCGTATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAAAGACAGAAGATTGCTGCACAACAGGCTGCGGAGAAGCAGAAACCAAAGCAGACATCTGACCAAGCTCGGAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTATATGCTGAAACTGATGGAAGTATGCAAAGCTCGCGGATTTGTATATGGCATTATACCTGAAAAGGGGAAGCCAGTTAGTGGTGCTTCCGATAACATTCGAGCTTGGTGGAAAGAAAAGGTTAAATTCGATAAGAATGGACCGGCTGCCATAGCTAAGTATGAAGCAGAATGTCTTGCCAAGGGAGAGGCTGATGGAAATGGAAGCGGTAATTCCCAGAGCGTTCTTCAAGACCTGCAGGATGCGACCCTCGGGTCTCTTTTGTCTTCTTTGATGCAACATTGCGATCCCCCTCAGCGGAAGTACCCTTTAGAAAAGGGGGTTCCTCCACCCTGGTGGCCCTCTGGAAATGAAGATTGGTGGGCAAAACTTGGTCTTTCCCATGGCAATAGTCCTCCTTATAAGAAGCCACATGATTTGAAGAAGATGTGGAAAGTTGGGGTTTTAACAGCTGTGATTAAACATATGTCGCCTGATATTGCTAAGATAAGGAGGCATGTACGCCAGTCGAAATGCTTACAAGATAAGATGACAGCAAAGGAGAGTGCAATTTGGTTGGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCGAGCAGTGATAATGGGGCATCTGGAATAACAGAGACACCAGTAGGTCGCCGTGAAAAGCAAGCTGCAGTAAGCAGTGACAGTGACTATGATGTTGATCTTGCTGATGATGGTGTCGGGTCAGTTTCTTCTAAAGAGGACAGGAGAAACCAATCAGTAGATGCGGAGCCATCCAGTAATCTACATAGTAATACTCCTCAACCTGCTCAAGTAAAGGAGCAAGGTGAAAAGCATAGGAGAAAAAGGCATCGTGGTGGCAGGACAAAACCTGTCGATCAAACACTGGCTCCATCTCAGAACGAAGAAGAACCAAGCATGGAACCAAGAAATACTCATCTAGATATAAACCATTCTGATGTACCATTAGATAGATTTGAAATACCAGGAAACCAACTAGAAAAGGATACTGTCACAGCTTTGAGGCCACTGGAGAAGGATTTGGATGTCCAATCAGAAGTACCAGCTGCCCGGTTCAACGTGTTCTCTGCAACGCCCTCTGAAAATATCAACATAATTTCCACCCAGAGCATGTATGTTGATGGAAGACCTTTGTTGTATCCTGTAATGCAGAATGCTGAGGTACAACATGAAAGTGCTTACAATATTTATAATCCATCGATGGAATATAGATCCAATCATGATGTACAGCATCCTCAATTTGTTAATGAGCATGAAATGAGATTGGAGGAAGGAGTACATGTGCCAACACAACATAGAAACAATGAGACTATAGGAGATTTCAACTATGTAAAAGAAACGTTCAACACCGAACAAGACCGGCCTGTTGATACACAGTTTGGATCACCAATCAACAGTCTATCATTGGATTATGGAGCATTTAATAGTCCGTTCCATCTTGGAATCGACGGTGCAAGCTCGTTCGATGACTTTTTGGTTGATGACGATTTGATCCAATACTTCGGGATTGACTGCAAGAATGCAGCTCACCGACCTCCACGCTTGACGGGGTTCTTTTCCCCGGTTAGCTGGGAACCTTCCTCTTTGATCTTATCTAATATTATCAAGACTGTAGGCTACATTTGTAGGAGAATTCATGACATTATAATTCTCATGTTCTGGTTCCCTTTTTGTATGATCCATTCATCAATCTTTCTCCAATCTCTGCCGCCTACTTATGAATTAAGCCTACCCTATCCTGTTCTTGATACCCTACTCTCTTCCGAGTTTCACCCGTTCATAGTGAGGCCATGCTATGAAGTAGTATCAGCTGGGCAGTTTCGATCGCGCTTGGGTGTTACCGGTGGATCATATGTTTTGTAG 2157 43.44 MENLMMVDDALGDCSDMEVDDIRCDNIAEKDVSDEEIEAEDLEKRMWKDRIKLKRIKERQKIAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAKGEADGNGSGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWAKLGLSHGNSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASGITETPVGRREKQAAVSSDSDYDVDLADDGVGSVSSKEDRRNQSVDAEPSSNLHSNTPQPAQVKEQGEKHRRKRHRGGRTKPVDQTLAPSQNEEEPSMEPRNTHLDINHSDVPLDRFEIPGNQLEKDTVTALRPLEKDLDVQSEVPAARFNVFSATPSENINIISTQSMYVDGRPLLYPVMQNAEVQHESAYNIYNPSMEYRSNHDVQHPQFVNEHEMRLEEGVHVPTQHRNNETIGDFNYVKETFNTEQDRPVDTQFGSPINSLSLDYGAFNSPFHLGIDGASSFDDFLVDDDLIQYFGIDCKNAAHRPPRLTGFFSPVSWEPSSLILSNIIKTVGYICRRIHDIIILMFWFPFCMIHSSIFLQSLPPTYELSLPYPVLDTLLSSEFHPFIVRPCYEVVSAGQFRSRLGVTGGSYVL 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11719073 11721949 + Lag0034857.1 Lac3g1329 601751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1329 718 MobiDBLite consensus disorder prediction 346 363 - -
Lac3g1329 718 MobiDBLite consensus disorder prediction 62 85 - -
Lac3g1329 718 FunFam Ethylene insensitive 3-like 1 74 152 - -
Lac3g1329 718 Pfam Ethylene insensitive 3, DNA-binding domain 40 287 IPR047091 GO:0003700(InterPro)
Lac3g1329 718 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 564 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Lac3g1329 718 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1329 718 MobiDBLite consensus disorder prediction 289 402 - -
Lac3g1329 718 Gene3D - 160 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1329 718 Gene3D - 74 152 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac3g1329 718 Coils Coil 25 59 - -
Lac3g1329 718 FunFam Ethylene insensitive 3-like 1 161 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1329 Lac-Chr3:11719073 Lac8g2252 Lac-Chr8:40785075 5.00E-94 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23638 PF04873 EIN3 2.80E-127 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1329 K14514 - csv:101210347 1040.02