Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1358 ATGCAGTCAAAATCTGAAACCAATAATCAGCTTGAATCTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATTGGGTACAATCCTATTCCATTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGACGGCCAGTCTGTGTCTAATAACGACGTAAATGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGAATCTCCACATTCCGCTGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCATCCTCTTTACCAGCTATGCACGGTGAATGTCTGACGCAGTCTACACAACTCGAACTTGTTGGTCACTCTATTGCATGTGCATCAAATCCATATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGCCATCAGCCATTGGGCTACCCTATGGTTGGAGCGCCACATGCTAGAATGCCGTTGCCCATTGAGATAGCACAGGACCCCGTTTTCGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCACGCCATAAGAAGGACGAGGGGTAGTGGAGGGCGTTTCGCCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAACGTAAACCAGAGTGGTTACCACCTAAACGATGGTTCTGAACAGCAGAATGGAAGCTCCTTGACGAACAAGGCCTCTGAGTAG 816 46.45 MQSKSETNNQLESDPNGAPSTSIYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATESPHSAGSYRQDAQKMQHVSSSLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKNEADGKEMHSDNVNQSGYHLNDGSEQQNGSSLTNKASE 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12001465 12004020 + Lag0034886.1 Lac3g1358 601780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1358 271 MobiDBLite consensus disorder prediction 208 271 - -
Lac3g1358 271 MobiDBLite consensus disorder prediction 39 102 - -
Lac3g1358 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1358 271 MobiDBLite consensus disorder prediction 208 227 - -
Lac3g1358 271 MobiDBLite consensus disorder prediction 228 242 - -
Lac3g1358 271 MobiDBLite consensus disorder prediction 243 271 - -
Lac3g1358 271 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Lac3g1358 271 MobiDBLite consensus disorder prediction 1 20 - -
Lac3g1358 271 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1358 271 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1358 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 261 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac3g1358 271 MobiDBLite consensus disorder prediction 42 69 - -
Lac3g1358 271 MobiDBLite consensus disorder prediction 1 22 - -
Lac3g1358 271 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1358 271 SMART cbf3 172 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1358 271 Gene3D - 173 235 - -
Lac3g1358 271 MobiDBLite consensus disorder prediction 85 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1358 K08064 - - csv:101212860 477.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1358 Lac-Chr3:12001465 Lac4g2653 Lac-Chr4:45495004 2.50E-38 dispersed
Lac6g3088 Lac-Chr6:48399045 Lac3g1358 Lac-Chr3:12001465 3.20E-28 transposed
Lac3g1358 Lac-Chr3:12001465 Lac9g2815 Lac-Chr9:46204186 2.80E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g2815 . 18 273 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.8 2.3e-60 229.9
Lac3g1358 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 1.9e-47 187.2
Lac1g3582 . 92 237 CCAAT-HAP2 Transcription Factor Family AT2G34720 55.4 1.1e-36 150.6
Lac1g3582 . 35 237 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.2 1.3e-49 193.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23641 PF02045 CBFB_NFYA 2.00E-26 No_clan Lac TF