Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1358 ATGCAGTCAAAATCTGAAACCAATAATCAGCTTGAATCTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATTGGGTACAATCCTATTCCATTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGACGGCCAGTCTGTGTCTAATAACGACGTAAATGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGAATCTCCACATTCCGCTGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCATCCTCTTTACCAGCTATGCACGGTGAATGTCTGACGCAGTCTACACAACTCGAACTTGTTGGTCACTCTATTGCATGTGCATCAAATCCATATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGCCATCAGCCATTGGGCTACCCTATGGTTGGAGCGCCACATGCTAGAATGCCGTTGCCCATTGAGATAGCACAGGACCCCGTTTTCGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCACGCCATAAGAAGGACGAGGGGTAGTGGAGGGCGTTTCGCCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAACGTAAACCAGAGTGGTTACCACCTAAACGATGGTTCTGAACAGCAGAATGGAAGCTCCTTGACGAACAAGGCCTCTGAGTAG 816 46.45 MQSKSETNNQLESDPNGAPSTSIYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATESPHSAGSYRQDAQKMQHVSSSLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKNEADGKEMHSDNVNQSGYHLNDGSEQQNGSSLTNKASE 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12001465 12004020 + Lag0034886.1 Lac3g1358 601780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1358 271 MobiDBLite consensus disorder prediction 208 271 - -
Lac3g1358 271 MobiDBLite consensus disorder prediction 39 102 - -
Lac3g1358 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1358 271 MobiDBLite consensus disorder prediction 208 227 - -
Lac3g1358 271 MobiDBLite consensus disorder prediction 228 242 - -
Lac3g1358 271 MobiDBLite consensus disorder prediction 243 271 - -
Lac3g1358 271 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Lac3g1358 271 MobiDBLite consensus disorder prediction 1 20 - -
Lac3g1358 271 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1358 271 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1358 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 261 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac3g1358 271 MobiDBLite consensus disorder prediction 42 69 - -
Lac3g1358 271 MobiDBLite consensus disorder prediction 1 22 - -
Lac3g1358 271 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1358 271 SMART cbf3 172 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g1358 271 Gene3D - 173 235 - -
Lac3g1358 271 MobiDBLite consensus disorder prediction 85 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1358 Lac-Chr3:12001465 Lac4g2653 Lac-Chr4:45495004 2.50E-38 dispersed
Lac6g3088 Lac-Chr6:48399045 Lac3g1358 Lac-Chr3:12001465 3.20E-28 transposed
Lac3g1358 Lac-Chr3:12001465 Lac9g2815 Lac-Chr9:46204186 2.80E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23641 PF02045 CBFB_NFYA 2.00E-26 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1358 K08064 - csv:101212860 477.633