Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1400 ATGTTTCAAGAAGAAGGCACATCCTCCATAACTTCCTCCCCTCTCCAGTTGTTCACAATGATGTCTCTTTCTCCTAAATTGGGTTCTCCATATCCATGGCTTAGAGAGCTCAAATCTGAGGAGAGGGGCTTGTATTTAATCCATTTGTTGCTTACCTGTGCAAACCATGTGGCTGTTGGTAGCCTTGACAGTGCTAATCTTGGCCTTGATCAAATATCCCATCTTGCTTCTGCTGATGGTGATACAATGCAGCGGATTGCGGCGTACTTTGCCGAGGCACTCGCAGATCGAATCCTCAAGACTTGGCCTGGTCTTTACAAGGCCTTCAACTCCACTAAGATACCAATGGTTTCAGAGGAGATTCTTGTTAAGAAGCTGTTTTTTGAAATGTTTCCTTTCCTCAAGGTGGCTATTGTGCTTACTAATCAAGCTATTGTTGAAGCCATGGAGGGGGAAAAGATGATTCATATCATTGATCTCAATGCCAATGAAACTGCTCAGTGGCTTGCACTTTTGCAAGTTTTGAGTGTCAGGCCTGAAGGACCTCCTCATTTGAGAATCACTGGGGTTCATCCACAGAAAGAGGTTCTGGATCAAATGGCTCGTAGGCTGACCGAAGAAGCCGAAAAATTGGATATCCCGTTTCAATTCAATTCGGTTATTAGCCGATTAGAGGATCTTGATATGGAAAAGCTTCGTGTAAAAACTGGGGAGGCTCTGGCTATCAACTCAGTTCTTCAGTTGCATACCCTGTTGGCCTCTGATAATGAAGTCATGCAAAAGCCATCTCCATCAGCAGCAAAGAGTGCAAATGGAGTTCAATACTCGAGATTCCCGCACTTGAACCAAACCACCTTGAGCGAGTTACTTGACAAGGATTTGGTTAACAGGTGCAGTCCGAGTCCCGACTCAGTTTCCTCATCAGCATTATCTCAAGCTCATGCTGCGAAGATCGACAGCTTTCTGAATGGATTGTGGAGTTTGACGCCAAAGGTGATGGTTGTAACAGAACAAGATTCTAACCATAATGGTTCAACACTTATGGAGAGATTACTAGAGGCTCTCCACACATATGCAGCTATTTTTGATTGCTTAGAATCTAACATGTCAAGAACATCCCTGGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGGGAAGAGATTAAGAACATTATAGCTTGTGAGGGAGCTGAAAGGAAGGAACGACACGAAAAGCATGAGAAGTGGAGTCAACGGTTCGATCTCGCGGGATTCAGGCATGTGTCTTTGAGTTATTATGGCATGCTGCAGGCACGGAGCCTGTTGCAGAGGTATGGTTGTGATGGTTATAGGATGAAGGAGGAGAATGGTTGTGTGATGCTTTGTTGGCAAGATCGTCCGTTGTACTCGGTATCGGCTTGGAGGTGTTGTAAGTAG 1416 44.7 MFQEEGTSSITSSPLQLFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDSANLGLDQISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPMVSEEILVKKLFFEMFPFLKVAIVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHPQKEVLDQMARRLTEEAEKLDIPFQFNSVISRLEDLDMEKLRVKTGEALAINSVLQLHTLLASDNEVMQKPSPSAAKSANGVQYSRFPHLNQTTLSELLDKDLVNRCSPSPDSVSSSALSQAHAAKIDSFLNGLWSLTPKVMVVTEQDSNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGAERKERHEKHEKWSQRFDLAGFRHVSLSYYGMLQARSLLQRYGCDGYRMKEENGCVMLCWQDRPLYSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12513692 12515107 - Lag0034928.1 Lac3g1400 601822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1400 471 Pfam GRAS domain family 46 468 IPR005202 -
Lac3g1400 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
Lac3g1400 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 41 467 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009739(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0736 Lac-Chr13:5707303 Lac3g1400 Lac-Chr3:12513692 1.40E-165 dispersed
Lac3g1400 Lac-Chr3:12513692 Lac8g2990 Lac-Chr8:46753538 8.30E-66 dispersed
Lac3g1400 Lac-Chr3:12513692 Lac1g2904 Lac-Chr1:49926542 9.30E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23643 PF03514 GRAS 5.80E-142 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1400 - - - 0.0