Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g1409 | ATGGCAGCCAGTGCCCTAGCTCTGTCTTCTTCAACCTTTCTTCTAGCTATTTGCAAAAGCTTCATGGTCTTCTTGACTGGCTCATTCATGGCGGCTGTTCTCATCAGGTTGTTTTCCTATTATGGGAAAAGAAAGCAGTCTGTTGGCACTGCAGCTCTCCCACCCGGCCCGTCTCCGTGGCCTATCGCCGGCTGCCTCCCGACGATATGGCGAAGGAAGCCGAGATACCGATGGATTCACAGCGTCATGGAAGAGCTAAACACCGAAATCGCATGCATCCGTCTTGGCCAAACCCATGTCATTCCTGTGACGTCTCCAGAACTCGCCGTCGAGTTTCTGAAGACGCACGACTCTCTATTTGCGTCGCGACCGATCACCGTTACCACCGACATGTTCAGCGACGGGTTCCTCACCGCAGGCGTCGCGCCGTGGGGAGACCAATGGAGGAAGATGAGAAGAGTCCTCACATCGGAAATCCTCAGTCCAGCTCAACACCGGTGGATGCTCGCAAAGAGAACCGAAGAAGCCGACAATCTCCTACGATACGTGTTCCGTTTAACGACAGCGAACGACGACGACGACGTCGGTGGAGGGGCAGTGGTTAACCTGAGAAGCATAACGCAGCATTATTCGGGGAATGTGATGCGACGAATGATGTTCGATAGGCGATACTACGGCGGAGGAAGAGCGGACGGGGGGCCGGCGGCGGAGGAAGAAGAGCATATCGGAGCATTGTTTACGATTCTTCAACATGTTTACGCAATTTGTGTATCGGATTACATGCCATGTTTGAAGGCGTTTGATTTGGATGGTCACGAGAGGATTGTTAAGAAGGCTTTGAATGTTATTAGAAAGTATGAAGAGCCCATCATTGAGGAGAGAGTGCAGCAATGGAAAGATGGGAGGAGGACGGAGGCTGAGGACATGTTGGATATCTTCATCTCGCTCAAAGATGGCGATGGGAAGCCATTGTTGTCAGTCAGGGAGATTAAAGCACAGATTACGGAACTACTTCTCGCAACAGTGGACAATCCATCGAACGCAGTGGAGTGGGCCATAGCAGAGATGTTAAACCAGCCCCAAATCCTCCAAACCGCCATCGAAGAACTCGACAGAGTCGTCGGAAAACAGCGCCTTGTCCAAGAATCCGACCTCCCAAATCTCAAATTCCTCACCGCCTGCGCCAGAGAGGCCCTCCGCCTCCACCCAATCGCCCCCTTCAACCTCCCTCACATTGCCATCGTCGACGCCGTCGTCGCCGGCTACTTCATCCCCGCCGGCAGCCACGTCCTCCTAAGCCGCCTTGGACTCGGCCGGAACCCTAGGGTTTGGCACGACCCGATGCGATACGATCCGAACAGACATCTCCAAGATCCGGGCGCCGATCCCAACCTAGGGGAGCCCGATCTGAGGTTTATTACATTCACCAGAGGGCGGAGAGGGTGTATGGGCGGCACGCTTGGGACTGCCATTACGATGATGCTGTTGGCTAGGCTTGTGCAGGGATTTTCTTGGCGGTTGCCGCCCGGTGTGGCGGCGATTGACCTGTCAGAGTCTGACCAATTGTTTCTGAAGAATCCTCTGTTCCTGTTTGCAGAGCCGCGACTGCCGGAATCTCTGTACCCTGATTCCGAAACACAAGGGAGAAACTTGTTTTAA | 1659 | 53.89 | MAASALALSSSTFLLAICKSFMVFLTGSFMAAVLIRLFSYYGKRKQSVGTAALPPGPSPWPIAGCLPTIWRRKPRYRWIHSVMEELNTEIACIRLGQTHVIPVTSPELAVEFLKTHDSLFASRPITVTTDMFSDGFLTAGVAPWGDQWRKMRRVLTSEILSPAQHRWMLAKRTEEADNLLRYVFRLTTANDDDDVGGGAVVNLRSITQHYSGNVMRRMMFDRRYYGGGRADGGPAAEEEEHIGALFTILQHVYAICVSDYMPCLKAFDLDGHERIVKKALNVIRKYEEPIIEERVQQWKDGRRTEAEDMLDIFISLKDGDGKPLLSVREIKAQITELLLATVDNPSNAVEWAIAEMLNQPQILQTAIEELDRVVGKQRLVQESDLPNLKFLTACAREALRLHPIAPFNLPHIAIVDAVVAGYFIPAGSHVLLSRLGLGRNPRVWHDPMRYDPNRHLQDPGADPNLGEPDLRFITFTRGRRGCMGGTLGTAITMMLLARLVQGFSWRLPPGVAAIDLSESDQLFLKNPLFLFAEPRLPESLYPDSETQGRNLF | 552 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12641445 | 12644836 | - | Lag0034937.1 | Lac3g1409 | 601831 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g1409 | 552 | PANTHER | CYTOCHROME P450 703A2-RELATED-RELATED | 29 | 541 | IPR051382 | - | |
| Lac3g1409 | 552 | Pfam | Cytochrome P450 | 54 | 527 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1409 | 552 | Gene3D | Cytochrome P450 | 48 | 536 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1409 | 552 | FunFam | Cytochrome P450 9 | 46 | 539 | - | - | |
| Lac3g1409 | 552 | PRINTS | E-class P450 group I signature | 108 | 129 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1409 | 552 | PRINTS | E-class P450 group I signature | 472 | 482 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1409 | 552 | PRINTS | E-class P450 group I signature | 329 | 346 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1409 | 552 | PRINTS | E-class P450 group I signature | 482 | 505 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1409 | 552 | PRINTS | E-class P450 group I signature | 433 | 457 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1409 | 552 | PRINTS | E-class P450 group I signature | 210 | 228 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1409 | 552 | PRINTS | E-class P450 group I signature | 349 | 375 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1409 | 552 | PRINTS | E-class P450 group I signature | 392 | 410 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1409 | 552 | SUPERFAMILY | Cytochrome P450 | 52 | 535 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g1409 | Lac-Chr3:12641445 | Lac3g1415 | Lac-Chr3:12747938 | 1.10E-165 | dispersed | |
| Lac3g1409 | Lac-Chr3:12641445 | Lac3g1410 | Lac-Chr3:12652694 | 3.00E-176 | tandem |
Pathway information