Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g1415 | ATGGAAGCTTTCTTAGAAAACCCTGCAACTTCCATGACCAAACCCTTGATTCTCATGGCTTCCATTTGTATGATGTATTATTATTGGAAAAGCAAGCACTCAACCCAGCGAGCAGCAGCTCTCCCACCAGGCCCAAAGCCCTGGCCTCTCCTTGGCTGCATACCAGCAATGTGCACCCAATCCCAACCTCACCGATGGATTCACGCAATAATGAAGCAATTCAACACTGAAATTGCCTGCATCCGTCTCGGAAACACCTATATAATTCCCGTCACTTCCCCCGAACTCGCCGTCGAGTTTCTAAAGACGCACGACGCCGCCTTCGCGTCGCGTTCGTCGATTTGCAACACCGTCAACATCTTATCCCATGGATATCTCACCACAGCCTTTTCATCACCGGGAGAGCAATGGAAGAAGATGAGAAGAATACTTGCATCACAGATATTCACTCCATCAACCCTTCAGCAAATGCTTGGCCATCGAGTCGACGAGGCCGACGCTCTTCTACGTTACATCTTCCGCCTGACCTCGACGAATGCCGACAATGGAGGTGGCGCAGTGGTTAACGTGAGGAGCATTACACAACATTATTGTGGAAATATCATCAGAAGAATGTTGTTCAATAGAAGATACTACGGACTGGGAAGGGAAGATGAGGGGCCAACTTTGGAAGAAGAAGAGCACAATCAAGCATTGCTGACAATTCTTAGGCATGTCAATGCATTCTCTATATCAGATTTCATGCCTTGCTTGAAGCCGTTTGATTTAGATGGACACCAGAAGATTCTAAGAAATGCTTTGAAAGTCGTTACAAAGTATGATGAACCCATTATAAATGACAGAGTGCAACAATGGAGAGATGGAAAGAAACAAGTGGTTGAAGACATTCTTGATATTCTCATTTCATATAAAGATGAGAAGAAAATCTCACTGTCAATTGAAGAGATCAAGGCTCAAATCACAGAGCTACAAATTGCAACCATCGACAATCCTTCAAACGCAGTGGAATGGACCATGGCCGAATTACTGAATCAACCAAAGATTCTGCAGAAAGCAATTGAAGAACTGGATGGAGTAGTTGGAAGAGACAAGCTCGTTCAAGAATCTGACATCCCAAAACTCAAGTATCTCACAGCTTGTATTAGAGAATCCTTTCGACTTCATCCATTTTCACCCTTCAATGTTCCTCATGTCTCAAACTCTGACATGGTCGTGGGTGGCTACTTCATTCCCAAAGGCAGTGAAGTCCTGCTGAGCCGTTCAGGTCTCGGTCGAAACTCAAGGATTTGGGAAGATCCAATGAGGTTTAATCCAGAACGTCATCTGATAGATGGGACCATTGAATTATTGGGATTGTCAGAGCCTAGTTTAAGATTCATTACCTTTACCAGAGGAAGAAGAGGCTGCGTTGGTAGCTCATTGGGCACCAACATTACCATAATGTTGTTTGCTAGATTGCTGCAAGGATTTTCATGGAGCTTAGTGCCCGGAATGACACAAATCAAATTCTCCGAGTCTGATGATCTTTGTCTCCCAAAGCCATTACACCTACAAGCACGACCACGACTATCTCATACTATGTACCAAAAATGA | 1593 | 44.38 | MEAFLENPATSMTKPLILMASICMMYYYWKSKHSTQRAAALPPGPKPWPLLGCIPAMCTQSQPHRWIHAIMKQFNTEIACIRLGNTYIIPVTSPELAVEFLKTHDAAFASRSSICNTVNILSHGYLTTAFSSPGEQWKKMRRILASQIFTPSTLQQMLGHRVDEADALLRYIFRLTSTNADNGGGAVVNVRSITQHYCGNIIRRMLFNRRYYGLGREDEGPTLEEEEHNQALLTILRHVNAFSISDFMPCLKPFDLDGHQKILRNALKVVTKYDEPIINDRVQQWRDGKKQVVEDILDILISYKDEKKISLSIEEIKAQITELQIATIDNPSNAVEWTMAELLNQPKILQKAIEELDGVVGRDKLVQESDIPKLKYLTACIRESFRLHPFSPFNVPHVSNSDMVVGGYFIPKGSEVLLSRSGLGRNSRIWEDPMRFNPERHLIDGTIELLGLSEPSLRFITFTRGRRGCVGSSLGTNITIMLFARLLQGFSWSLVPGMTQIKFSESDDLCLPKPLHLQARPRLSHTMYQK | 530 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12747938 | 12750820 | - | Lag0034943.1 | Lac3g1415 | 601837 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g1415 | 530 | Gene3D | Cytochrome P450 | 34 | 528 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1415 | 530 | PANTHER | CYTOCHROME P450 703A2-RELATED-RELATED | 17 | 525 | IPR051382 | - | |
| Lac3g1415 | 530 | PRINTS | E-class P450 group I signature | 197 | 215 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1415 | 530 | PRINTS | E-class P450 group I signature | 419 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1415 | 530 | PRINTS | E-class P450 group I signature | 459 | 469 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1415 | 530 | PRINTS | E-class P450 group I signature | 335 | 361 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1415 | 530 | PRINTS | E-class P450 group I signature | 469 | 492 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1415 | 530 | PRINTS | E-class P450 group I signature | 96 | 117 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1415 | 530 | PRINTS | E-class P450 group I signature | 378 | 396 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1415 | 530 | Pfam | Cytochrome P450 | 42 | 514 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1415 | 530 | SUPERFAMILY | Cytochrome P450 | 41 | 522 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g1409 | Lac-Chr3:12641445 | Lac3g1415 | Lac-Chr3:12747938 | 1.10E-165 | dispersed | |
| Lac3g1410 | Lac-Chr3:12652694 | Lac3g1415 | Lac-Chr3:12747938 | 5.80E-207 | dispersed | |
| Lac3g1415 | Lac-Chr3:12747938 | Lac12g2490 | Lac-Chr12:41931134 | 2.00E-68 | dispersed | |
| Lac3g1415 | Lac-Chr3:12747938 | Lac3g1416 | Lac-Chr3:12774888 | 7.70E-193 | tandem |
Pathway information