Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g1416 | ATGGAAGCCTTCTTAGAAAACTCTGCGACTTCCATAACCAAAACCTTCATTCTGATTGTTTTCATGGCTTCCATTTGTGTCGTATGTTTCCAGTATTACTGGAAAAGCAAGAACTTAATCCAGCAAGCGGCTCTCCCACCAGGCCCAAAACCCTGGCCTCTCGTTGGCTGCATTCTAGCAATGTGGAGGCACACGGAACGCCACCGGTGGATTCATGCAATAATGAAGCAATTCAACACTGAAATTGCCTGCATCCGTCTCGGAAACACCTACGTAATTCCCGTCACTTCCCCCGAACTCGCCGTCGAGTTTCTAAAGACGCACGACGCCGCCTTTGCATCCCGGCCCGTCCCGAAAACCATCGACATGTTAACTCTCGGGATTAGTGGCACTATTTTTTCTCCAATGAGAAACCAGTGGAAGAAGATGAAAAAGATACTTGTATCACGTGTACTCAACGCTTCGAGTCTTGAAGGAATTGCAGTGGTGAACTTAAGAAGCATTACACAACATTATTGTGGCAATATCATTAGAAAGATGATATTCAATAGAAGATACTATGGCGGAGGAAGGGAAGATGGAGGGCCAACTTTTGAAGAAGAAGAGCATAATAAAGCTTTGTTCACAATCATTAGTCATGTTTATGCATTTTCTGTATCGGATTTCATGCCTTGTTTAAGACCATTTGATTTGGACGGACATGAGAATATTTTGAAAAAGGCTTCTGAAGTGCTCAGAAAGTACGATGAACCCATTATAAATGAGAGAGTGCAACAATGGAAAGATGGTAAGAACAAAGAGGTTGGAGACATTCTTGATATTCTTATCTCACTTAAAGATGAGAATGACAAACCACTCTTGTCAATTGAAGAGATTAAAGTTCAAATCATGGCAATGGCAGAAATGATCAATCAACCAAAGATTCTCAACAAAGCAGTTGAAGAATTGGATAGAGTGGTTGGAAGAGACAGGCTCGTTGAAGAACATGACATCCCAAAACTCAAGTATCTGACAGCTTGTGCAAGAGAATCTTTTCGGCTTCATCCCTTTTCACCATTCAATGTTCCTCACGTCTCAAACTCTGATATGGTTGTGGCTGGCTACTTCATCCCAAAAGGTAGCCATGTCCTATTAAGTCGTTTAGGACTTGGACGAAACCCAAGGATCTGGGAGGACCCCATGAAGTTTGATCCAGAACGTCATTTCAGAGATGATACAGTTGAAAAATTAGGATTGTTAGAACCAGGTTTGCGATTTATTACCTTTACGAGAGGCAGGAGAGGCTGCATAGGCAGCTCATTGGGCAGCAGCATTACCATGATGCTGTTTGCAAGGATGCTACAAGGATTTTCATGGAGCTTGCTACAGGGAATGACGAAGATTGACTTTTCTGAATCTGATGAAATTTCTCTTCCTCAGCCATTGTGCCTGCATGCAGAACCACGTCTATATTCTTCCATGTATCCAACTTATTGA | 1476 | 42.41 | MEAFLENSATSITKTFILIVFMASICVVCFQYYWKSKNLIQQAALPPGPKPWPLVGCILAMWRHTERHRWIHAIMKQFNTEIACIRLGNTYVIPVTSPELAVEFLKTHDAAFASRPVPKTIDMLTLGISGTIFSPMRNQWKKMKKILVSRVLNASSLEGIAVVNLRSITQHYCGNIIRKMIFNRRYYGGGREDGGPTFEEEEHNKALFTIISHVYAFSVSDFMPCLRPFDLDGHENILKKASEVLRKYDEPIINERVQQWKDGKNKEVGDILDILISLKDENDKPLLSIEEIKVQIMAMAEMINQPKILNKAVEELDRVVGRDRLVEEHDIPKLKYLTACARESFRLHPFSPFNVPHVSNSDMVVAGYFIPKGSHVLLSRLGLGRNPRIWEDPMKFDPERHFRDDTVEKLGLLEPGLRFITFTRGRRGCIGSSLGSSITMMLFARMLQGFSWSLLQGMTKIDFSESDEISLPQPLCLHAEPRLYSSMYPTY | 491 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12774888 | 12776594 | + | Lag0034944.1 | Lac3g1416 | 601838 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g1416 | 491 | Gene3D | Cytochrome P450 | 40 | 486 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1416 | 491 | PRINTS | E-class P450 group I signature | 419 | 429 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1416 | 491 | PRINTS | E-class P450 group I signature | 295 | 321 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1416 | 491 | PRINTS | E-class P450 group I signature | 379 | 403 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1416 | 491 | PRINTS | E-class P450 group I signature | 338 | 356 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1416 | 491 | PRINTS | E-class P450 group I signature | 100 | 121 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1416 | 491 | PRINTS | E-class P450 group I signature | 429 | 452 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1416 | 491 | PANTHER | CYTOCHROME P450 703A2-RELATED-RELATED | 20 | 486 | IPR051382 | - | |
| Lac3g1416 | 491 | Pfam | Cytochrome P450 | 46 | 154 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1416 | 491 | Pfam | Cytochrome P450 | 162 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g1416 | 491 | SUPERFAMILY | Cytochrome P450 | 46 | 482 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g1416 | Lac-Chr3:12774888 | Lac12g2490 | Lac-Chr12:41931134 | 3.30E-57 | dispersed | |
| Lac3g1416 | Lac-Chr3:12774888 | Lac3g1418 | Lac-Chr3:12805083 | 6.70E-26 | proximal | |
| Lac3g1415 | Lac-Chr3:12747938 | Lac3g1416 | Lac-Chr3:12774888 | 7.70E-193 | tandem |
Pathway information