Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1509 ATGGCCACTCAGGCTCTTGTTTCCTCTTCTTTAACCTCTTCAGTCGGCGCTGCCAGGCAGAGATTAGGACCAAAACCCTCCTCTGGATCCTCCAGAAAAGCTGCTTCTTTTGTTGTTAGAGCTGAAGGCGGAGCTCCTGTTAAGCAAGGAGCAGATAGACAACTATGGTTCGCATCAAAACAAAGTCTTTCTTACCTAGATGGAAGTCTTCCGGGTGACTACGGATTCGACCCATTGGGGCTATCGGACCCCGAAGGCACAGGAGGGTTTATCGAGCCGAGATGGTTGGCATACGGCGAGGTGATCAACGGGCGATTCGCCATGTTGGGAGCAGCAGGAGCCATTGCCCCAGAGATCTTTGGATCACTAGGGTTAATCCCTCCAGAAACAGCCCTCCCATGGTTCAAAACTGGGGTAATCCCACCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACACTCTTTGTCTTAGAGATGGCACTAATGGGCTTTGCTGAGCACAGAAGATTTCAAGATTGGGCCAATCCAGGGTCCATGGGGAAGCAATACTTTTTGGGACTAGAGAAGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCTCTAGGGTTTGGAAAAGATGAGAAGTCAATGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCAATCTTGGGTTACTTTGTACAAGGTCTTGTGACAGGTGTTGGGCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCAGTCAACAACAATGTTTTGACCAGCCTTAAATTCCATTAG 822 49.64 MATQALVSSSLTSSVGAARQRLGPKPSSGSSRKAASFVVRAEGGAPVKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13926876 13928206 - Lag0035037.1 Lac3g1509 601931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1509 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 268 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lac3g1509 273 Pfam Chlorophyll A-B binding protein 64 243 IPR022796 -
Lac3g1509 273 MobiDBLite consensus disorder prediction 1 17 - -
Lac3g1509 273 Gene3D Chlorophyll a/b binding protein domain 54 272 - -
Lac3g1509 273 FunFam Chlorophyll a-b binding protein, chloroplastic 54 272 - -
Lac3g1509 273 MobiDBLite consensus disorder prediction 1 35 - -
Lac3g1509 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1509 Lac-Chr3:13926876 Lac6g0319 Lac-Chr6:2619212 1.80E-44 dispersed
Lac3g1509 Lac-Chr3:13926876 Lac10g0087 Lac-Chr10:677428 2.40E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1509 K08909 - csv:101202993 527.324