Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g1540 ATGGCGGAGATCGAGGCTCCTTCCGACTTTCTATGCCCCATTTCTCTACAGATCATGAGAGACCCGGTGACGGTCTCGACCGGGATCACATACGACCGAGAGAGCATAGAGAAATGGCTGTCGTCCTGCGTCGTCCCGAGCTGCCCCGTGACGAAGCAGCGGTTGAGCGATTCGGATTTGACGCCGAACCACACGCTCCGGCGGCTGATTCAAGGGTGGTGCACACTCAACGCTGGCCATGGGGTCGAGAGGATCCCAACCCCTAAGGCTTTGGTTGATAGATTACATGTTGTTAAGATTGTTAAGGAGGCTGTGAGGTCTCCTAGCTCAAGGCTTGAGTGCTTGCAGAGATTGAAAGCTGTTTTGGTTGAGAGTGAGAGCAACAAAATCTACTTGCAGGCAAGCATTTCAACACTATGA 420 52.86 MAEIEAPSDFLCPISLQIMRDPVTVSTGITYDRESIEKWLSSCVVPSCPVTKQRLSDSDLTPNHTLRRLIQGWCTLNAGHGVERIPTPKALVDRLHVVKIVKEAVRSPSSRLECLQRLKAVLVESESNKIYLQASISTL 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14375134 14375553 - Lag0035068.1 Lac3g1540 601962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g1540 139 CDD RING-Ubox_PUB 7 60 IPR045210 -
Lac3g1540 139 PANTHER WDSAM1 PROTEIN 3 133 IPR045185 GO:0061630(InterPro)
Lac3g1540 139 Pfam U-box domain 6 75 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac3g1540 139 SMART Ubox_2 9 73 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac3g1540 139 SUPERFAMILY RING/U-box 4 78 - -
Lac3g1540 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Lac3g1540 139 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac3g1540 139 FunFam RING-type E3 ubiquitin transferase 1 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1540 Lac-Chr3:14375134 Lac9g2738 Lac-Chr9:45540783 2.60E-47 dispersed
Lac3g1540 Lac-Chr3:14375134 Lac8g1555 Lac-Chr8:33211156 9.80E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g1540 - - - 0.0